When the edge of a chromosome is reached and EHH > EHH_CUTOFF selscan should abort computation at that locus and move to the next. However, selscan presently integrates the truncated curves and reports scores at those loci.
This does not affect loci near centromeres, which are handled as large gaps and are appropriately skipped.
szpiech
commented
10 years ago
When the edge of a chromosome is reached and EHH > EHH_CUTOFF selscan should abort computation at that locus and move to the next. However, selscan presently integrates the truncated curves and reports scores at those loci.
This does not affect loci near centromeres, which are handled as large gaps and are appropriately skipped.