I wonder what the negative and positive XP-EHH values mean. In the original publication of Sabeti et al 2007, they state that positive values reflect recent selection in population A and negative values represent selection in the population B. In selscan, the input file are --hap and --ref: So would a negative EHH-value mean likely selection in the reference population?
Hi there,
I wonder what the negative and positive XP-EHH values mean. In the original publication of Sabeti et al 2007, they state that positive values reflect recent selection in population A and negative values represent selection in the population B. In selscan, the input file are --hap and --ref: So would a negative EHH-value mean likely selection in the reference population?
Thanks for clarification.
And btw thank you for this great program!
Best wishes