szpiech / selscan

Haplotype based scans for selection
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|iHS| >2 uses standardized iHS or unstandardized iHS? #42

Closed weiwFu closed 4 years ago

weiwFu commented 4 years ago

Hi

I want to know the extreme positive iHS or extreme negative iHS ( |iHS| >2) uses standardized iHS or unstandardized iHS?

--crit - val : Set the critical value such that a SNP with | iHS| > CRIT_VAL is marked as an extreme SNP. Default as in Voight et al. Default : 2.00

Thank you in advance

Weiwei Fu

szpiech commented 4 years ago

Hello, it uses the standardized scores.