Closed YuanwenGuo closed 3 years ago
Sorry I just realized there are descriptions about xpehh norm results in the manual pdf. It looks like I can find max, min and etc in the table, but is there a normalized value for the window which could be used for plotting?
Thank you for the help, Yuanwen
Hi there, I think your best option for a single value per window is to plot the max or min, depending on which target population you're interested in.
Thank you for the suggestion!
Best, Yuanwen
Hello,
I am trying to get normalized xpehh values within windows using commands: norm --xpehh --files $input --bp-win --winsize 20000
The output has 9 columns, could you please provide header information for each column? Which one is the normalized xpehh? The output is as follows: 1 20001 105 0 0 1 100 0.427604 -1.47963 20001 40001 355 0 0.0478873 100 1 0.726029 -2.30077 40001 60001 949 0 0 1 100 1.21741 -1.75812 60001 80001 532 0 0 100 100 1.76434 -1.32259 80001 100001 667 0 0 100 100 1.85594 -0.384881 100001 120001 488 0 0 100 100 1.85094 -1.61615 120001 140001 529 0.0415879 0.00378072 100 100 2.14336 -2.10125 140001 160001 404 0 0 100 100 0.782917 -1.62801 160001 180001 571 0 0 100 100 1.74265 -1.46968 180001 200001 598 0 0 100 100 1.70662 -0.920458
Thank you, Yuanwen