Feature request: multiple chromosomes in one input file

szpiech / selscan

Haplotype based scans for selection

GNU General Public License v3.0

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Feature request: multiple chromosomes in one input file #61

Open andreaswallberg opened 3 years ago

andreaswallberg commented 3 years ago

Dear developers,

I know this is asking a lot but a change to selscan to be able to read halotype information from multiple chromosomes from a single input file (such as a tped) would be much appreciated.

The logistics of working with draft genomes with thousands of scaffolds w/o chromosome assignment is not trivial :-)

szpiech commented 3 years ago

I will keep this in mind, although development is a bit slow as I'm the only one working on it (and my code is fairly messy).