<#scores in window> crit (default
2)>
This might be an older version of norm, as the newer versions distinguish
between windows enriched for positive vs negative scores for the XP stats.
-Zachary
On Mon, Mar 6, 2023 at 1:02 PM Zach Nikolakis ***@***.***>
wrote:
> I've run this command:
> norm --xpehh --crit-percent 0.05 --bp-win --winsize 10000 --files
> ${pop.A.vs.B}.chr7.10kb.xpehh.out
>
> and I'm getting this output below but I'm not sure what the columns
> actually are, any help is appreciated.
>
> 1 10001 0 -1 -1
> 10001 20001 0 -1 -1
> 20001 30001 0 -1 -1
> 30001 40001 0 -1 -1
> 40001 50001 0 -1 -1
> 50001 60001 0 -1 -1
> 60001 70001 0 -1 -1
> 70001 80001 9 0 -1
> 80001 90001 115 0.00869565 100
> 90001 100001 124 0.403226 1
> 100001 110001 110 0.436364 1
> 110001 120001 95 0 100
> 120001 130001 180 0.166667 100
> 130001 140001 66 0 100
> 140001 150001 131 0.381679 5
>
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szpiech
commented
1 year ago
I've run this command: norm --xpehh --crit-percent 0.05 --bp-win --winsize 10000 --files ${pop.A.vs.B}.chr7.10kb.xpehh.out
and I'm getting this output below but I'm not sure what the columns actually are, any help is appreciated.
1 10001 0 -1 -1 10001 20001 0 -1 -1 20001 30001 0 -1 -1 30001 40001 0 -1 -1 40001 50001 0 -1 -1 50001 60001 0 -1 -1 60001 70001 0 -1 -1 70001 80001 9 0 -1 80001 90001 115 0.00869565 100 90001 100001 124 0.403226 1 100001 110001 110 0.436364 1 110001 120001 95 0 100 120001 130001 180 0.166667 100 130001 140001 66 0 100 140001 150001 131 0.381679 5