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szpiech / selscan

Haplotype based scans for selection
GNU General Public License v3.0
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Advice needed. Pooled population data. #93

Closed d00bin closed 1 year ago

d00bin commented 1 year ago

Dear Zachary,

I would like to identify genes that are under selection in a particular species across multiple populations. Most of the data I have comes from RNAseq projects. What kind of statistics would you recommend to use in this case? Or should I just stick with Fst scans?

szpiech commented 1 year ago

Hello,

I think for pooled data you're pretty much stuck with Fst, or at least none the statistics in selscan would be appropriate.

-Zachary

On Tue, Mar 14, 2023 at 11:18 AM d00bin @.***> wrote:

Dear Zachary,

I would like to identify genes that are under selection in a particular species across multiple populations. Most of the data I have comes from RNAseq projects. What kind of statistics would you recommend to use in this case? Or should I just stick with Fst scans?

— Reply to this email directly, view it on GitHub https://github.com/szpiech/selscan/issues/93, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABAKRQUTGEQUEJ4LN5PFNODW4CD4RANCNFSM6AAAAAAV2SZ2WY . You are receiving this because you are subscribed to this thread.Message ID: @.***>

d00bin commented 1 year ago

Thanks for a quick reply!