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sztup / scarHRD

MIT License
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Writing output issues #20

Open umasaxena opened 3 years ago

umasaxena commented 3 years ago

Hello, I believe there might be minor tweaking, but the error I am getting is 

_scarHRD::scar_score("./seqz_inscarhrd.tsv", chr.in.names=FALSE,
+                     seqz = FALSE,
+                     reference = "grch37")_

Determining HRD-LOH, LST, TAI 
Error in write.table(t(HRDresulst), paste0(outputdir, "/", run_name, "_HRDresults.txt"),  : 
  invalid 'row.names' specification

Could you please send me suggestions to resolve this .

Thanks

mkinnaman commented 3 years ago

I also get this error when running a file with multiple samples as opposed to one. WOuld be interested if their is a fix for this?

hfl112 commented 1 year ago

I split my input by sampleID, then it worked. I guess you can only run scarHRD sample by sample