sztup / scarHRD

MIT License
105 stars 52 forks source link

Cannot install scarHRD - error message #3

Open D0g4 opened 5 years ago

D0g4 commented 5 years ago

Hi there, I am trying to install your package, but it is not working. I believe there might be some problem with the sequenza package. This is what I am getting:

devtools::install_github("sztup/scarHRD")

Error in read.dcf(path) : Found continuation line starting ' sequenza (>= 2.1.2 ...' at begin of record.

I did install the lastest version of sequenza beforehand . I am putting the sessioinfo below. Any help will greatly appreciated. Thanks!

sessionInfo()

R version 3.5.1 (2018-07-02) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows >= 8 x64 (build 9200)

Matrix products: default

locale: [1] LC_COLLATE=Danish_Denmark.1252 LC_CTYPE=Danish_Denmark.1252 LC_MONETARY=Danish_Denmark.1252 [4] LC_NUMERIC=C LC_TIME=Danish_Denmark.1252

attached base packages: [1] parallel stats graphics grDevices utils datasets methods base

other attached packages: [1] sequenza_2.1.2 squash_1.0.8 copynumber_1.22.0 BiocGenerics_0.28.0

loaded via a namespace (and not attached): [1] Rcpp_1.0.1 compiler_3.5.1 GenomeInfoDb_1.18.2 XVector_0.22.0
[5] remotes_2.0.2 prettyunits_1.0.2 bitops_1.0-6 tools_3.5.1
[9] zlibbioc_1.28.0 digest_0.6.18 pkgbuild_1.0.3 pkgload_1.0.2
[13] memoise_1.1.0 rlang_0.3.2 cli_1.1.0 rstudioapi_0.10
[17] curl_3.3 yaml_2.2.0 xfun_0.5 GenomeInfoDbData_1.2.0 [21] withr_2.1.2 knitr_1.22 fs_1.2.7 desc_1.2.0
[25] S4Vectors_0.20.1 IRanges_2.16.0 devtools_2.0.1 stats4_3.5.1
[29] rprojroot_1.3-2 glue_1.3.1 R6_2.4.0 processx_3.3.0
[33] sessioninfo_1.1.1 callr_3.2.0 magrittr_1.5 usethis_1.4.0
[37] backports_1.1.3 ps_1.3.0 htmltools_0.3.6 GenomicRanges_1.34.0
[41] assertthat_0.2.1 RCurl_1.95-4.12 crayon_1.3.4