t-neumann / slamdunk

Streamlining SLAM-seq analysis with ultra-high sensitivity
GNU Affero General Public License v3.0
37 stars 22 forks source link

about pair-end data #147

Closed bioinformatica closed 5 months ago

bioinformatica commented 5 months ago

Dear Tobias:

My samples were sequenced by a sequencing company, and they used paired-end sequencing to obtain 1.fq and 2.fq. Can I use slamdunk all to analyze only one file, 1.fq, without processing the other file? I have read #57, this step is really difficult for me, I am a beginner in processing sequencing data.

best wishes!

t-neumann commented 5 months ago

Yes you can also simply use R1, that should give you reasonable results