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t-neumann
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slamdunk
Streamlining SLAM-seq analysis with ultra-high sensitivity
GNU Affero General Public License v3.0
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"More columns than column names" error message when running alleyoop utrrates
#114
cz0430
closed
6 months ago
7
ReadCount to get number of reads mapped?
#113
my-linh-luu
closed
6 months ago
2
error in alleyoop summary
#112
beckedorff
closed
6 months ago
12
alleyoop utrrates output file extension
#111
jvanbelzen
opened
2 years ago
0
Index Files (*.bam.bai) Missing?
#110
jvanbelzen
closed
2 years ago
1
Using DUNK for detection of RNA editing
#109
andreagillespie
closed
6 months ago
6
SNP calling based on all samples vs no4SU samples
#108
crueckle
closed
6 months ago
12
Signal at alternate contigs lost
#107
monikaperez
closed
6 months ago
1
Multimapping influences output at read length of 152bp
#106
monikaperez
closed
6 months ago
1
Multimapping is not default and bed file isn't used
#105
monikaperez
closed
6 months ago
1
Extra tags + HISAT3 +
#104
aleighbrown
closed
6 months ago
6
error when running count dunk
#103
jonwruffin
closed
3 years ago
3
Help with Parameters (-fb, -c) for running SLAMDUNK; comparison of published data
#102
crueckle
closed
3 years ago
19
Slamdunk parallel processing
#101
bernt-matthias
closed
3 years ago
1
Filtering reads for having ≥2 T>C conversions
#100
os306
closed
9 months ago
15
analysing HISAT-3N bam files
#99
pillailab
closed
6 months ago
7
missing DS tag
#98
bobermayer
closed
3 years ago
2
Calculating conversion rates other than T>C
#97
goeringr
closed
3 years ago
5
Slamdunk all command not working
#96
aishwarya-gondane
closed
3 years ago
24
Output .bam of T-C containing reads?
#95
snaqvi1990
closed
3 years ago
1
default 12bp trimming from 5' end
#94
snaqvi1990
closed
3 years ago
3
Alleyoop dedup
#93
snaqvi1990
closed
3 years ago
1
slamdunk installation fails: Library not loaded: @rpath/libhts.2.dylib
#92
drowsygoat
closed
6 months ago
9
can SLAM-DUNK be used on 10x based scSLAM-seq?
#91
jon-xu
closed
3 years ago
0
3' UTR file generation
#90
zsun89
closed
3 years ago
3
slamDunk for totalRNA kit
#89
kopardev
closed
3 years ago
2
SlamDunk for smallRNA data
#88
jaqx008
closed
6 months ago
26
3'UTR bed file
#87
peneder
closed
3 years ago
2
Slamdunk Count: Paired-end slam-seq mapping with ngm
#86
penguinmeow
closed
6 months ago
5
[E::idx_find_and_load] errors
#85
shokohirosue
closed
3 years ago
9
Pathing issues
#84
Furciferi
closed
4 years ago
5
Multimapper-Reassignment Stragety
#83
iris-summer
closed
4 years ago
3
How to obtain half-life table?
#82
osamnsmr
closed
4 years ago
8
error in SNP dunk
#80
CharlotteAnne
closed
3 years ago
4
Update globalRatePlotter.R
#79
Hypertyz
closed
4 years ago
0
Alleyoop is not working properly
#78
Hypertyz
closed
4 years ago
4
Is slamdunk suitable for single cell SLAM-seq analysis
#77
pigraul
closed
6 months ago
1
error in alleyoop utrrates
#76
minaka1484
closed
3 years ago
17
Permission denied trying to run globalRatePlotter.R
#75
FitzsimmonsCM
closed
4 years ago
8
Background TC counts
#74
BrianLohman
closed
4 years ago
5
minor update of code snippet to python3 required
#73
bsennblad
closed
4 years ago
0
Replace alignment step
#72
sarahet
closed
4 years ago
2
alleyoop utrrates does not estimate read length
#71
aparajitadutta
closed
4 years ago
1
Differential Expression for SLAM-seq
#70
aksenovavy
closed
4 years ago
14
slamdunk all Unable to locate files
#69
aparajitadutta
closed
4 years ago
10
error in alleyoop merge
#68
BrianLohman
closed
6 months ago
3
High conversion rates in smallRNA control samples
#67
Enidanellani
closed
4 years ago
2
'sys' has no attribute 'maxint'
#66
BrianLohman
closed
4 years ago
6
Unable to point to NGM dependency
#65
BrianLohman
closed
4 years ago
7
Condaslimmming
#64
t-neumann
closed
4 years ago
0
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