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taborlab
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FlowCal
Python Flow Cytometry Calibration Library
MIT License
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Version 1.3.1
#363
MHunt-tools
closed
2 months ago
0
Replace the ticker.is_decade that was removed in matplotlib 3.8
#362
ym3141
opened
5 months ago
0
Updated plot functions re: matplotlib deprecation
#361
MHunt-tools
closed
2 months ago
0
Matplotlib error is_decade
#360
MHunt-tools
opened
6 months ago
3
MEFLing causes bimodality around zero fluorescence
#359
ppreshant
closed
1 year ago
12
Feature Request: Allow use of subplots with flowcal.plot
#358
ethanj801
closed
6 months ago
3
during installation using anaconda version
#357
shuvadeep
closed
6 months ago
1
Matplotlib 3.4 deprecated calling plt.gca() with parameters, which the plot module does in scatter3d()
#356
JS3xton
opened
2 years ago
0
namespace warning
#355
lin1996-ux
opened
2 years ago
0
Is there a way to export the .fcs data after beads calibration?
#354
ppreshant
closed
6 months ago
5
chore: soft check of FCS3.0, 3.1 required keywords in TEXT segment
#353
JJSong0805
opened
3 years ago
2
Running the Excel UI from the command line with Python 3 throws a RuntimeWarning.
#352
JS3xton
opened
3 years ago
0
Violin plots fail with list inputs when data scale is logicle.
#351
JS3xton
opened
3 years ago
0
Restructure excel_ui.run() to process Excel files lacking Beads or Samples sheets.
#350
JS3xton
opened
3 years ago
0
Fix bug where violins fail to render with old numpy.
#349
JS3xton
closed
3 years ago
0
Make violin plots more robust to empty array inputs.
#348
JS3xton
closed
3 years ago
1
Make parameter checking in plot._LogicleTransform more precise.
#347
JS3xton
closed
3 years ago
0
Fix unpacking of density gate outputs.
#346
JS3xton
closed
3 years ago
0
Support "m-to-n" compensation, wherein the linear compensation model is overdetermined (more channels than fluorophores)
#345
JS3xton
opened
3 years ago
0
Remove `transform` module and update `FCSData` class and `mef` and `compensate` modules
#344
JS3xton
opened
3 years ago
0
Violin plots fail when called with empty array
#343
JS3xton
opened
3 years ago
2
Violin plots fail when empty array is included among violin data
#342
JS3xton
opened
3 years ago
2
Violin plots fail with Logicle scale if no channel is specified.
#341
JS3xton
closed
3 years ago
1
Compensation (Python API)
#340
castillohair
opened
3 years ago
37
Restructure excel_ui.run() to process Excel files lacking Beads or Samples sheets.
#339
JS3xton
closed
3 years ago
2
Bi-exponential scaling/trasformation
#338
sinnamone
closed
4 years ago
3
Add `bin_mask` parameter to gate.density2d() to facilitate the reuse of density gates
#337
JS3xton
closed
3 years ago
6
Correct numpy minimum requirement
#336
JS3xton
closed
4 years ago
0
Add plot.violin()
#335
JS3xton
closed
3 years ago
32
Change excel_ui functions to output OrderedDicts
#334
JS3xton
closed
4 years ago
0
Refactored plot.hist1d to permit `weights` kwarg.
#333
JS3xton
closed
4 years ago
2
Add function to easily create violin plots.
#332
JS3xton
closed
3 years ago
1
Coerce mef.get_transform_fxn input to permit None values
#331
JS3xton
closed
4 years ago
0
Correct scipy minimum requirement
#330
JS3xton
closed
4 years ago
0
Change pandas ExcelWriter engine from XlsxWriter to openpyxl
#329
JS3xton
closed
4 years ago
13
Remove palettable
#328
JS3xton
closed
4 years ago
6
Bead calibration fails with old but supported version of Anaconda
#327
JS3xton
closed
4 years ago
0
Migrate pandas ExcelWriter engine from XlsxWriter to openpyxl
#326
JS3xton
closed
3 years ago
1
Migrate pandas read_excel engine from xlrd to openpyxl.
#325
JS3xton
closed
4 years ago
7
Clean up unit tests
#324
JS3xton
closed
4 years ago
4
feat: add channel_labels
#323
abawchen
closed
3 years ago
10
Calibration with lab using CS&T beads
#322
JJSong0805
closed
3 years ago
3
Strange values after loading FCS3.1 file from Fortessa x20
#321
chofski
closed
4 years ago
3
Parse and save channel keys, marker key and marker value
#320
abawchen
closed
3 years ago
5
modifying data of the s object.
#319
aromanillos
closed
4 years ago
2
MacOS issues
#318
castillohair
closed
4 years ago
3
MacOS annoyances
#317
castillohair
closed
4 years ago
0
Fixed file select box hanging after file selection on OSX.
#316
felixekn
closed
4 years ago
7
Locator tick fix in matplotlib >= 3.1.0
#315
castillohair
closed
5 years ago
1
Messed up tick values in logicle plots
#314
castillohair
closed
4 years ago
1
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