taborlab FlowCal issues

taborlab / FlowCal

Python Flow Cytometry Calibration Library

MIT License

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issues

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Version 1.3.1

#363 MHunt-tools closed 2 months ago
0
Replace the ticker.is_decade that was removed in matplotlib 3.8

#362 ym3141 opened 5 months ago
0
Updated plot functions re: matplotlib deprecation

#361 MHunt-tools closed 2 months ago
0
Matplotlib error is_decade

#360 MHunt-tools opened 6 months ago
3
MEFLing causes bimodality around zero fluorescence

#359 ppreshant closed 1 year ago
12
Feature Request: Allow use of subplots with flowcal.plot

#358 ethanj801 closed 6 months ago
3
during installation using anaconda version

#357 shuvadeep closed 6 months ago
1
Matplotlib 3.4 deprecated calling plt.gca() with parameters, which the plot module does in scatter3d()

#356 JS3xton opened 2 years ago
0
namespace warning

#355 lin1996-ux opened 2 years ago
0
Is there a way to export the .fcs data after beads calibration?

#354 ppreshant closed 6 months ago
5
chore: soft check of FCS3.0, 3.1 required keywords in TEXT segment

#353 JJSong0805 opened 3 years ago
2
Running the Excel UI from the command line with Python 3 throws a RuntimeWarning.

#352 JS3xton opened 3 years ago
0
Violin plots fail with list inputs when data scale is logicle.

#351 JS3xton opened 3 years ago
0
Restructure excel_ui.run() to process Excel files lacking Beads or Samples sheets.

#350 JS3xton opened 3 years ago
0
Fix bug where violins fail to render with old numpy.

#349 JS3xton closed 3 years ago
0
Make violin plots more robust to empty array inputs.

#348 JS3xton closed 3 years ago
1
Make parameter checking in plot._LogicleTransform more precise.

#347 JS3xton closed 3 years ago
0
Fix unpacking of density gate outputs.

#346 JS3xton closed 3 years ago
0
Support "m-to-n" compensation, wherein the linear compensation model is overdetermined (more channels than fluorophores)

#345 JS3xton opened 3 years ago
0
Remove `transform` module and update `FCSData` class and `mef` and `compensate` modules

#344 JS3xton opened 3 years ago
0
Violin plots fail when called with empty array

#343 JS3xton opened 3 years ago
2
Violin plots fail when empty array is included among violin data

#342 JS3xton opened 3 years ago
2
Violin plots fail with Logicle scale if no channel is specified.

#341 JS3xton closed 3 years ago
1
Compensation (Python API)

#340 castillohair opened 3 years ago
37
Restructure excel_ui.run() to process Excel files lacking Beads or Samples sheets.

#339 JS3xton closed 3 years ago
2
Bi-exponential scaling/trasformation

#338 sinnamone closed 4 years ago
3
Add `bin_mask` parameter to gate.density2d() to facilitate the reuse of density gates

#337 JS3xton closed 3 years ago
6
Correct numpy minimum requirement

#336 JS3xton closed 4 years ago
0
Add plot.violin()

#335 JS3xton closed 3 years ago
32
Change excel_ui functions to output OrderedDicts

#334 JS3xton closed 4 years ago
0
Refactored plot.hist1d to permit `weights` kwarg.

#333 JS3xton closed 4 years ago
2
Add function to easily create violin plots.

#332 JS3xton closed 3 years ago
1
Coerce mef.get_transform_fxn input to permit None values

#331 JS3xton closed 4 years ago
0
Correct scipy minimum requirement

#330 JS3xton closed 4 years ago
0
Change pandas ExcelWriter engine from XlsxWriter to openpyxl

#329 JS3xton closed 4 years ago
13
Remove palettable

#328 JS3xton closed 4 years ago
6
Bead calibration fails with old but supported version of Anaconda

#327 JS3xton closed 4 years ago
0
Migrate pandas ExcelWriter engine from XlsxWriter to openpyxl

#326 JS3xton closed 3 years ago
1
Migrate pandas read_excel engine from xlrd to openpyxl.

#325 JS3xton closed 4 years ago
7
Clean up unit tests

#324 JS3xton closed 4 years ago
4
feat: add channel_labels

#323 abawchen closed 3 years ago
10
Calibration with lab using CS&T beads

#322 JJSong0805 closed 3 years ago
3
Strange values after loading FCS3.1 file from Fortessa x20

#321 chofski closed 4 years ago
3
Parse and save channel keys, marker key and marker value

#320 abawchen closed 3 years ago
5
modifying data of the s object.

#319 aromanillos closed 4 years ago
2
MacOS issues

#318 castillohair closed 4 years ago
3
MacOS annoyances

#317 castillohair closed 4 years ago
0
Fixed file select box hanging after file selection on OSX.

#316 felixekn closed 4 years ago
7
Locator tick fix in matplotlib >= 3.1.0

#315 castillohair closed 5 years ago
1
Messed up tick values in logicle plots

#314 castillohair closed 4 years ago
1