taborrr / qbb2024-answers

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Day 3 Afternoon Exercise #5

Open schidambaran opened 2 weeks ago

schidambaran commented 2 weeks ago
Exercise Description Completion
Q1 Load data Yes
Skipped first two lines Yes
Removed newline character Yes
Tissue names, gene IDs, gene names, and expression data loaded into lists Yes
Q2 Expression data converted into a float array Yes
Q3 <_removed_> <_removed_>
Q4 Computed mean expression of first 10 genes Yes
Q5A Computed array-wide mean and median Yes
Q5B Interpreted array-wide mean and median Yes
Q6A Added pseudocount to expression array Yes
Q6B $log_2$ transformed expression array Yes
Q6C Compared and interpreted $log_2$ mean and median against pre-transformation mean and median Yes
Q7A Sorted array by the correct axis Yes
Q7B Computed $\Delta expression$ per gene Yes
Q8 Correctly identified count of genes where $\Delta expression > 10$ Yes

Great work!

Comments: - Please include a comment identifying the number of genes where $\Delta expression > 10$

taborrr commented 1 week ago

my comment in line 100 identifies the number of genes with this expression, "## there are 33 genes identified whose difference between the highest and second highest tissue expression is greater than 10"

schidambaran commented 1 week ago

Thank you! Your rubric has been updated.