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taborrr / qbb2024-answers

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Day 4 Morning Exercise #6

Open schidambaran opened 2 months ago

schidambaran commented 2 months ago
Exercise Description Completion
Q1A Construct dictionary of paired gene-tissue data from gene-tissue file Yes
Q1B Comments Yes
Q2A Construct dictionary of tissues and corresponding sample IDs from sample attribute file Yes
Q2B Comments Yes
Q3A Retrieve sample IDs from expression data file Yes
Q3B Comments Yes
Q4A Subset tissue-associated sample IDs to include only those present in expression data Yes
Q4A Comments Yes
Q5A Identified tissue types with the most samples Yes
Q5B Comments Yes
Q5C Identified tissue types with the fewest samples Yes
Q5D Comments Yes
Q6 Detailed comments on Q1-Q5 (see "Comments" components for each question above) Yes
Q7A Combine tissue names and gene IDs Yes
Q7B Log-transform expression data with a pseudocount of 1 Yes
Q7C Switch violin plot axes so categories are on y-axis Yes
Q7D Axis labels Yes
Q7E Discussion of results Yes

Great work! We did want a log2 transform for Q7B!