Closed apopli closed 6 years ago
Maybe you can solve the problem by creating the folder, below is my solution ( I test 2015 data , similar to 2017).
-- brats17-master -------- data --------------- BRATS2015_Training --------------- BRATS2015_Validation --------------- result15 ---------------------- HGG ---------------------- LGG --------------- ... -------- config15 -------- config17 -------- model15 -------- model17 -------- ...
"data" "result15" " HGG" "LGG" folder are necessary , but code doesn't create automatically!
Then, don't forget to check or change the path in test.py and test_all_class.txt.
It will be exciting if what I mention will help you !
@cb632482135qq The test worked after setting up the folder structure as you mentioned. Thanks a lot for your help!
@taigw When I run following command
python test.py config17/test_all_class.txt
I face the following error:
Data load, 100.0% finished
** ERROR (nifti_image_write_hdr_img2): cannot open output file 'result17/HGG/Brats17_CBICA_ATX_1.nii.gz'
HGG/Brats17_CBICA_ATX_1
** ERROR (nifti_image_write_hdr_img2): cannot open output file 'result17/HGG/Brats17_CBICA_AXN_1.nii.gz'
HGG/Brats17_CBICA_AXN_1
test time 16.6796910763
Traceback (most recent call last):
File "test.py", line 459, in <module>
test(config_file)
File "test.py", line 449, in test
np.savetxt(save_folder + '/test_time.txt', test_time)
File "/usr/local/lib/python2.7/dist-packages/numpy/lib/npyio.py", line 1307, in savetxt
open(fname, 'wt').close()
IOError: [Errno 2] No such file or directory: 'result17/test_time.txt'
Could you please suggest the solution.