takaram / kofam_scan

CLI tool to annotate genes with KOfam
https://www.genome.jp/tools/kofamkoala/
MIT License
66 stars 11 forks source link

Reorganize code and don't use require_relative in exec_annotation #14

Open duboism opened 4 years ago

duboism commented 4 years ago

The current organization of the code makes the code a bit hard to install because the main script (exec_annotation) use require_relative to find the lib/ directory (therefore the lib/ directory and exec_annotation must be in the same directory).

I don't know the conventions in the Ruby community but if I trust this book, the main script (exec_annotation) :

This would simplify installation in our environment for example and probably in most environments too.

duboism commented 3 years ago

Any thoughts ?