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takaram / kofam_scan

CLI tool to annotate genes with KOfam
https://www.genome.jp/tools/kofamkoala/
MIT License
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Which filtering parameters are recommended？ #3

Open slbai01 opened 4 years ago

slbai01 commented 4 years ago

Hello, I annotated the gene set with kofamscan software.

How many evalue and score filtering results do you recommend?

Thanks shenglong

takaram commented 4 years ago

I don't have any specific parameters to recommend. It depends on your purpose. If you'd like to reduce false positive hits, you might want stricter parameters. If you need fewer false negatives, then loose parameters will be more appropreate.