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takaram / kofam_scan

CLI tool to annotate genes with KOfam
https://www.genome.jp/tools/kofamkoala/
MIT License
66 stars 11 forks source link

default evalue? #4

Open soilmicrobiome opened 4 years ago

soilmicrobiome commented 4 years ago

what is the default e value? i could not find it in the readme? Is it 0.01 as with the online version? (https://www.genome.jp/tools/kofamkoala/)

takaram commented 4 years ago

KofamScan does not take E-value into account by default. Any hits with its score higher than the threshold will be marked with asterisks regardless of its E-value.

soilmicrobiome commented 3 years ago

so is it best to filter out and only use hits with marked with an . hits with no are "candidate" hits?

mw55309 commented 10 months ago

So what's the default threshold?