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takaram / kofam_scan

CLI tool to annotate genes with KOfam
https://www.genome.jp/tools/kofamkoala/
MIT License
66 stars 11 forks source link

Error: Unknown KO: #8

Closed timregan closed 4 years ago

timregan commented 4 years ago

Hi, I've seen a few Errors recently and wondered if you knew what might be causing them, or better still, how to fix them! Error message examples: kofamscan/bin/lib/kofam_scan/executor.rb:54:in delete': No such file or directory @ apply2files - ./tmp/tabular/K20351 (Errno::ENOENT) ... kofamscan/bin/lib/kofam_scan/executor.rb:62:ininitialize': No such file or directory @ rb_sysopen - ./tmp/tabular/K06344 (Errno::ENOENT)

Otherwise, it outputs a file just fine with plenty of hits, but I'm seeing more than a few of these.

Best wishes and thanks, Tim

takaram commented 4 years ago

Maybe you ran more than one KoScan in parallel, and used same tmpdir. If so, you should use --tmp-dir option with different directory for every process. Otherwise intermediate files for different queries are mixed, causing an error or a wrong result.

timregan commented 4 years ago

That was exactly the problem! Thanks so much. :)