takeshi-teshima / echelon-py

https://takeshi-teshima.github.io/echelon-py/
Apache License 2.0
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Add a cool dendrogram visualization #20

Open diadochos opened 3 years ago

diadochos commented 3 years ago

Annotating intermediate nodes https://stackoverflow.com/questions/30317688/annotating-dendrogram-nodes-in-scipy-matplotlib

We shall import scipy only within the visualization function: https://stackoverflow.com/questions/3095071/in-python-what-happens-when-you-import-inside-of-a-function

Upside-down dendrograms: https://stackoverflow.com/questions/55291984/upside-down-branching-in-scipy-dendrogram

Dendrogram data structure: https://qiita.com/sho-matsuo/items/cd7f2b66e572bf60048b

https://stackoverflow.com/questions/43513698/relation-between-dendrogram-plot-coordinates-and-clusternodes-in-scipy/43519473#43519473

diadochos commented 3 years ago
diadochos commented 3 years ago

Maybe Phylograms?

https://github.com/biopython/biopython/blob/69a220ba4db4ebe998d10f15583ab0bacee1aa69/Bio/Phylo/_utils.py#L182

References

https://biopython.org/wiki/Phylo http://etetoolkit.org/ http://etetoolkit.org/docs/latest/tutorial/tutorial_drawing.html http://etetoolkit.org/docs/latest/index.html