I have been trying a few other dendogram plotting programs and have been pleased with the flexibility of dendextend when used with ggplot. I am having difficulty in combining workflow with phyloseq.
Phyloseq offers the flexibility of performing unifrac and h.clustering, after which the result can be plotted in ggplot.
I have been trying a few other dendogram plotting programs and have been pleased with the flexibility of dendextend when used with ggplot. I am having difficulty in combining workflow with phyloseq. Phyloseq offers the flexibility of performing unifrac and h.clustering, after which the result can be plotted in ggplot.
GPUF<-UniFrac(physeq, weighted = FALSE) GP.hclust <- hclust(GPUF, method = "average") dend <- as.dendrogram(GP.hclust) ggplot(dend, horiz = T)
Can one passes the grouping info to dendextend so that the tip or branch can be color according to group? Name group A aaa B aaa C bbb D ccc