figure doesn't display in Firefox-based Jupyter

[abdlg]

I have noticed that the figures couldn't be displayed in the Firefox web browser when using the R kernel in Jupyter, but with Chrome it is working fine.

thanks

[alanocallaghan]

Could you post an example, just to make it easier to debug? Thanks

[koalive]

Hi,
I observe the same behavior. A simple: heatmaply(cor(iris[,-5])) does not display anything in my notebook (and no error message) with firefox (61.0.1) but works as expected with Chrome (67.0.3396.99).
You can find my sessionInfo() output below. Cheers!

R version 3.4.1 (2017-06-30) Platform: x86_64-apple-darwin15.6.0 (64-bit) Running under: macOS High Sierra 10.13.1 Matrix products: default BLAS: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRblas.0.dylib LAPACK: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base
other attached packages: [1] heatmaply_0.15.2 viridis_0.5.1 viridisLite_0.3.0 plotly_4.7.1
[5] ggplot2_3.0.0.9000 loaded via a namespace (and not attached): [1] httr_1.3.1 tidyr_0.8.1 jsonlite_1.5
[4] foreach_1.4.4 gtools_3.5.0 shiny_1.1.0
[7] assertthat_0.2.0 stats4_3.4.1 yaml_2.1.19
[10] robustbase_0.93-0 pillar_1.2.3 lattice_0.20-35
[13] glue_1.2.0 uuid_0.1-2 digest_0.6.15
[16] promises_1.0.1 RColorBrewer_1.1-2 colorspace_1.3-2
[19] httpuv_1.4.3 htmltools_0.3.6 plyr_1.8.4
[22] pkgconfig_2.0.1 xtable_1.8-2 purrr_0.2.5
[25] mvtnorm_1.0-8 scales_0.5.0.9000 webshot_0.5.0
[28] gdata_2.18.0 whisker_0.3-2 later_0.7.2
[31] tibble_1.4.2 withr_2.1.2 repr_0.15.0
[34] nnet_7.3-12 lazyeval_0.2.1 mime_0.5
[37] magrittr_1.5 crayon_1.3.4 mclust_5.4
[40] evaluate_0.10.1 MASS_7.3-50 gplots_3.0.1
[43] class_7.3-14 tools_3.4.1 registry_0.5
[46] data.table_1.11.4 trimcluster_0.1-2 stringr_1.3.1
[49] kernlab_0.9-26 munsell_0.5.0 cluster_2.0.7-1
[52] fpc_2.1-11 bindrcpp_0.2.2 compiler_3.4.1
[55] caTools_1.17.1 rlang_0.2.1 grid_3.4.1
[58] pbdZMQ_0.3-3 iterators_1.0.9 IRkernel_0.8.12.9000 [61] htmlwidgets_1.2 crosstalk_1.0.0 labeling_0.3
[64] bitops_1.0-6 base64enc_0.1-3 gtable_0.2.0
[67] codetools_0.2-15 flexmix_2.3-14 reshape2_1.4.3
[70] TSP_1.1-6 R6_2.2.2 seriation_1.2-3
[73] gridExtra_2.3 prabclus_2.2-6 dplyr_0.7.5
[76] bindr_0.1.1 KernSmooth_2.23-15 dendextend_1.8.0
[79] modeltools_0.2-21 stringi_1.2.3 IRdisplay_0.5.0
[82] Rcpp_0.12.17 gclus_1.3.1 DEoptimR_1.0-8
[85] tidyselect_0.2.4 diptest_0.75-7

[alanocallaghan]

Could you share a link to an example @koalive? I'm not too familiar with Jupyter

[koalive]

See this example. It seems that the heatmaps are not displayed in Github's preview anyway. But if I run this notebook locally, it is shown correctly in Chrome but not in Firefox.

[alanocallaghan]

Thanks! I'll have a look asap

[koalive]

Thanks. Actually, the problem seems to be common to other htmlwidgets (I can see figures from SigmaNet and BioCircos in Jupyter notebooks in Chrome but not in Firefox) as well, so I'll probably do some more tests and report it there.

[alanocallaghan]

That was going to be my first port of call. Thanks

[talgalili]

Is this bug related to heatmaply? Can we close this issue?

[koalive]

The issue still occurs, but all other htmlwidgets I use have the same behavior. Unless someone has a counter-example I guess you can assume the issue is on their side and close this thread.

[talgalili]

Sounds reasonable, thanks for the report :)