Closed bextra closed 7 years ago
Hi there, I see you are using heatmaply 0.6.0. Please update to the latest on CRAN (0.7.0). This is working fine for me:
Please let me know if it doesn't.
Cheers, Tal
p.s.: consider using the following for an alternative look at your data:
heatmaply(percentize(example_df))
Good tip on the percentize. I will update and see how it goes. Thanks!
Hi Tal. I have updated to heatmaply 0.7.0 and can generate the heatmap locally, but on our cluster, I'm still getting the error. Do you have any idea what could be causing that?
Here is the updated sessionInfo of our cluster:
R version 3.2.3 (2015-12-10)
Platform: x86_64-redhat-linux-gnu (64-bit)
Running under: Red Hat Enterprise Linux
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets base
other attached packages:
[1] beakR_0.1.3.9000 heatmaply_0.7.0 viridis_0.3.4
[4] plotly_4.5.6 scales_0.4.1 htmltools_0.3.5
[7] stringr_1.1.0 reshape2_1.4.1 ggplot2_2.2.1
[10] d3heatmap_0.6.1.1 knitr_1.14
loaded via a namespace (and not attached):
[1] gtools_3.5.0 modeltools_0.2-21 purrr_0.2.2
[4] kernlab_0.9-25 lattice_0.20-34 colorspace_1.2-7
[7] stats4_3.2.3 viridisLite_0.1.3 yaml_2.1.13
[10] base64enc_0.1-3 DBI_0.5-1 prabclus_2.2-6
[13] registry_0.3 fpc_2.1-10 foreach_1.4.3
[16] plyr_1.8.4 robustbase_0.92-6 munsell_0.4.3
[19] gtable_0.2.0 caTools_1.17.1 htmlwidgets_0.7
[22] mvtnorm_1.0-5 codetools_0.2-15 evaluate_0.10
[25] seriation_1.2-1 flexmix_2.3-13 class_7.3-14
[28] DEoptimR_1.0-6 trimcluster_0.1-2 methods_3.2.3
[31] Rcpp_0.12.7 KernSmooth_2.23-15 diptest_0.75-7
[34] formatR_1.4 gdata_2.17.0 jsonlite_1.1
[37] gplots_3.0.1 gridExtra_2.2.1 png_0.1-7
[40] digest_0.6.10 gclus_1.3.1 stringi_1.1.2
[43] dplyr_0.5.0 grid_3.2.3 bitops_1.0-6
[46] tools_3.2.3 magrittr_1.5 lazyeval_0.2.0
[49] tibble_1.2 cluster_2.0.5 whisker_0.3-2
[52] tidyr_0.6.0 dendextend_1.4.0 MASS_7.3-45
[55] assertthat_0.1 rmarkdown_1.1 httr_1.2.1
[58] iterators_1.0.8 R6_2.2.0 TSP_1.1-4
[61] mclust_5.2 nnet_7.3-12
I'm not sure what to say about that. What code is running in the cluster exactly?
(I think I filed this on the dextend package first on accident, so posting correctly here)
I am trying to plot a simple two columned dataframe and receive the following error:
Error: all(vapply(s, is.integer, NA)) is not TRUE
The dataframe I'm working with has two columns each with class = integer so I'm not seeing where this would come from. I have attached a subset of the df that still creates the issue.
Any help would be greatly appreciated. Below is version and session info.
example_df.Rda.zip
R version:
SessionInfo