talkowski-lab svtk issues

talkowski-lab / svtk

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issues

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svtk resolve StopIteration

#102 ghzhaole closed 3 years ago
1
Notes on svtk usage on svaba output

#101 jykr closed 3 years ago
0
standardized vcf files from Manta and Lumpy can not be indexed with tabix -p vcf *.vcf.gz

#100 liud2 opened 4 years ago
7
svtk bedcluster doesn't cluster events with identical coordinates

#99 mgonzalezporta opened 4 years ago
0
Creating a release/tag?

#98 holtgrewe opened 4 years ago
2
"no_effect" INFO tag

#97 kpjonsson opened 5 years ago
0
standardization not giving proper output

#96 Sendeman opened 5 years ago
6
Annotate error

#95 kpjonsson closed 5 years ago
1
setup.py imports

#94 jjfarrell opened 5 years ago
0
No module named 'svtk.baf' error

#93 jjfarrell opened 5 years ago
0
Standardize update for delly

#92 awacs closed 5 years ago
0
Smoove

#91 awacs closed 5 years ago
0
CHR fix for BND

#90 awacs closed 5 years ago
0
vcfcluster for pacbio SV calls?

#89 ggstatgen opened 5 years ago
0
Fix for interchromosomal BNDs in SRTest

#88 mwalker174 closed 5 years ago
0
Update `svtk annotate` for it to accept "chr([0-9]|X|Y)" and "([0-9]|X|Y)"

#87 SHuang-Broad closed 5 years ago
0
Clustering on second chr for translocation doesn't seem to be occurring for svtk resolve

#86 hab45 opened 5 years ago
0
svtk resolve breaks if unresolved file not specified

#85 hab45 opened 5 years ago
0
PESR BND

#84 awacs closed 5 years ago
0
fix ValueError in t-test

#83 tedsharpe closed 5 years ago
0
eliminate stochasticity in calculation of KS stats

#82 tedsharpe closed 6 years ago
0
Change PESR collection to place right clipping at alignment end location and count double-clipped reads

#81 cwhelan closed 6 years ago
0
Smoove

#80 awacs closed 6 years ago
0
Smoove

#79 awacs closed 6 years ago
0
Smoove

#78 awacs closed 6 years ago
0
Smoove

#77 awacs closed 6 years ago
0
Another bug

#76 awacs closed 6 years ago
0
Smoove

#75 awacs closed 6 years ago
0
don't filter smoove

#74 awacs closed 6 years ago
0
Add standardizer for smoove

#73 awacs closed 6 years ago
0
Complex module modification implemented

#72 xuefzhao closed 6 years ago
0
Bring rlc cpx dev branch up to speed with master

#71 RCollins13 closed 6 years ago
0
Add small updates to complex resolution

#70 RCollins13 closed 6 years ago
0
Rlc cpx dev

#69 RCollins13 closed 6 years ago
0
Merge complex linking debugging branch

#68 RCollins13 closed 6 years ago
0
Add --ignore-svtypes option to vcfcluster

#67 RCollins13 closed 6 years ago
0
Remove RdTest from complex SV resolution

#66 msto closed 6 years ago
0
Permit requiring minimum sample overlap in vcfcluster

#65 msto closed 6 years ago
0
Complex resolution updates

#64 msto closed 6 years ago
0
Complex resolution updates

#63 msto closed 6 years ago
0
Add RdTest wrapper

#62 msto closed 6 years ago
0
Add --preserve-genotypes flag to vcfcluster

#61 msto closed 6 years ago
0
Update label filters

#60 RCollins13 closed 6 years ago
0
Add regions file option to remote_tabix

#59 msto closed 6 years ago
0
Add count-sr function

#58 msto closed 6 years ago
0
Resolve MELT/Manta insertions internally with breakend insertions

#57 msto closed 6 years ago
0
add optional logging to pe and sr tests

#56 msto closed 6 years ago
0
Typo in svtk help text

#55 RCollins13 opened 6 years ago
0
Add blacklist filter after variant clustering

#54 msto closed 6 years ago
0
error in the labelers.py

#53 xuefzhao closed 6 years ago
0