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talmolab
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dreem
DREEM Relates Every Entities' Motion (DREEM). Global Tracking Transformers for biological multi-object tracking.
https://dreem.sleap.ai
BSD 3-Clause "New" or "Revised" License
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Fix implementation of max distance hyperparam for track linking
#83
shaikh58
opened
2 days ago
0
Integrate global tracking accuracy into eval pipeline
#82
shaikh58
opened
1 week ago
1
Implement automatic train test splits
#81
aaprasad
opened
1 month ago
1
Allow batch eval/inference flexibility
#80
aaprasad
opened
1 month ago
1
Use `sleap-io` video backend
#79
aaprasad
opened
1 month ago
1
RoPE embeddings
#78
shaikh58
opened
1 month ago
1
Patch small bugs
#77
aaprasad
closed
2 months ago
1
Revert "Patch small bugs"
#76
aaprasad
closed
2 months ago
1
Patch small bugs
#75
aaprasad
closed
2 months ago
1
`dreem.io` class functions for creating dummy data
#74
aaprasad
opened
2 months ago
0
Implement Rotary Positional Embeddings
#73
aaprasad
opened
2 months ago
0
Switch augmentations backend to `kornia`
#72
aaprasad
closed
1 month ago
1
Implement automatic train test splits
#71
aaprasad
opened
2 months ago
1
Support multi-video SLP files
#70
talmo
opened
2 months ago
0
Write a guide for API-based inference
#69
talmo
opened
2 months ago
0
Turn off visual encoder
#68
aaprasad
opened
2 months ago
1
Set up eval pipeline
#67
aaprasad
closed
2 months ago
1
Extract features over detections rather than frames in tracker
#66
aaprasad
opened
2 months ago
0
Track Stitching
#65
aaprasad
opened
3 months ago
1
Open video file only at init
#64
aaprasad
closed
2 months ago
2
Set up logging
#63
aaprasad
closed
2 months ago
1
Update `python` version to `python 3.11`
#62
aaprasad
closed
2 months ago
1
add cli entry points
#61
aaprasad
closed
2 months ago
1
Rename `biogtr` to `dreem`
#60
aaprasad
closed
3 months ago
1
Patch transformer forward by replacing nan with -1 placeholder
#59
aaprasad
closed
3 months ago
1
Config docs (manual, similar to this)
#58
aaprasad
closed
4 months ago
0
Use `logging` instead of standard output/`warnings`
#57
aaprasad
closed
2 months ago
1
Change video backend from `imageio` `PIL.Image` and `skimage.io` to `sleap_io.Video`?
#56
aaprasad
opened
4 months ago
6
Documentation
#55
aaprasad
closed
3 months ago
1
Docs
#54
talmo
closed
3 months ago
1
Update everything to Python 3.11
#53
talmo
closed
2 months ago
1
BioGTR --> DREEM
#52
talmo
closed
3 months ago
0
Refactor inference script
#51
aaprasad
closed
4 months ago
1
Refactor `biogtr.inference.postprocessing.filter_max_center_dist`
#50
aaprasad
opened
4 months ago
0
Expose modules
#49
aaprasad
closed
4 months ago
1
Remove kwargs and mutable defaults
#48
aaprasad
closed
4 months ago
1
Refactor data structures
#47
aaprasad
closed
4 months ago
2
Use instances as model input
#46
aaprasad
closed
4 months ago
1
High level API/CLI for SLEAP integration
#45
talmo
closed
2 months ago
2
Instance/node dropout
#44
aaprasad
closed
4 months ago
1
Remove `**kwargs` from `biogtr.models.GlobalTrackingTransformer`
#43
aaprasad
closed
4 months ago
1
Instance Dropout Augmentation
#42
aaprasad
closed
4 months ago
1
Multi anchor crop
#41
aaprasad
closed
4 months ago
2
Remove mutable defaults
#40
aaprasad
closed
4 months ago
1
Modularize data structures, create `AssociationMatrix` and `Tracklet` Data Structures
#39
aaprasad
closed
4 months ago
2
Randomize instance order and crop
#38
aaprasad
closed
4 months ago
1
Use temporary directories for tests
#37
aaprasad
closed
4 months ago
1
Refactor transformer decoder
#36
aaprasad
closed
5 months ago
1
Store embeddings in `Instance` or `Frame` Objects
#35
aaprasad
closed
4 months ago
1
Refactor the heaviest of lifters
#34
talmo
closed
5 months ago
1
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