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talmolab / sleap-anipose

SLEAP to Anipose triangulation pipeline for 3D multi-animal pose tracking.
GNU General Public License v3.0
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I am facing the following problem during triangulation #53

Open wyclearnpy opened 1 month ago

wyclearnpy commented 1 month ago

I used the data in tests to conduct experiments. The camera calibration process could proceed, but errors occurred in the triangulation part. Below is the terminal print information. Traceback (most recent call last): File "D:\anaconda\envs\sleap-anipose1\lib\runpy.py", line 194, in _run_module_as_main return _run_code(code, main_globals, None, File "D:\anaconda\envs\sleap-anipose1\lib\runpy.py", line 87, in _run_code exec(code, run_globals) File "D:\anaconda\envs\sleap-anipose1\Scripts\slap-triangulate.exe__main.py", line 7, in File "D:\anaconda\envs\sleap-anipose1\lib\site-packages\click\core.py", line 1157, in call return self.main(*args, kwargs) File "D:\anaconda\envs\sleap-anipose1\lib\site-packages\click\core.py", line 1078, in main rv = self.invoke(ctx) File "D:\anaconda\envs\sleap-anipose1\lib\site-packages\click\core.py", line 1434, in invoke return ctx.invoke(self.callback, ctx.params) File "D:\anaconda\envs\sleap-anipose1\lib\site-packages\click\core.py", line 783, in invoke return callback(*args, **kwargs) File "D:\anaconda\envs\sleap-anipose1\lib\site-packages\sleap_anipose\triangulation.py", line 356, in triangulate_cli return triangulate( File "D:\anaconda\envs\sleap-anipose1\lib\site-packages\sleap_anipose\triangulation.py", line 176, in triangulate [ File "D:\anaconda\envs\sleap-anipose1\lib\site-packages\sleap_anipose\triangulation.py", line 177, in cgroup.triangulate_optim( File "D:\anaconda\envs\sleap-anipose1\lib\site-packages\aniposelib\cameras.py", line 1193, in triangulate_optim p3ds = self.triangulate(points_shaped, progress=init_progress) File "D:\anaconda\envs\sleap-anipose1\lib\site-packages\aniposelib\cameras.py", line 483, in triangulate new_points[cnum] = cam.undistort_points(sub) File "D:\anaconda\envs\sleap-anipose1\lib\site-packages\aniposelib\cameras.py", line 313, in undistort_points out = cv2.undistortPoints(points, cv2.error: OpenCV(4.6.0) D:\a\opencv-python\opencv-python\opencv\modules\calib3d\src\undistort.dispatch.cpp:401: error: (-215:Assertion failed) CV_IS_MAT(_src) && CV_IS_MAT(_dst) && (_src->rows == 1 || _src->cols == 1) && (_dst->rows == 1 || _dst->cols == 1) && _src->cols + _src->rows - 1 == _dst->rows + _dst->cols - 1 && (CV_MAT_TYPE(_src->type) == CV_32FC2 || CV_MAT_TYPE(_src->type) == CV_64FC2) && (CV_MAT_TYPE(_dst->type) == CV_32FC2 || CV_MAT_TYPE(_dst->type) == CV_64FC2) in function 'cvUndistortPointsInternal' image In addition, when I execute the pytest tests command, the following error occurs. Is there a relationship between the two? image

wyclearnpy commented 1 month ago

image Information about the first picture