Closed shwan19 closed 1 year ago
Hi @shwan19,
Do you mind posting the full error message that you are running into? And also the output after running the sleap-diagnostic
command?
We do not have PySide6
listed as a dependency anywhere and we changed all our Qt references to use qtpy
as an abstraction layer for either PyQt5/PySide2/PyQt6/PySide6.
We instead list PySide2
as a dependency:
https://github.com/talmolab/sleap/blob/ebd2e1ec8f062efaf2588884bb46e92a8030ddcd/requirements.txt#L15-L17
So I would expect qtpy
to call PySide2
IF it is installed. We can figure out what is installed by looking at the output of the sleap-diagnostic
command.
After running sleap-diagnostic
(just to give me some info to trouble shoot please), a workaround you could try would be to pip install PySide2
in your SLEAP conda environment.
Thanks, Liezl
Hi roomrys!
(I work with the first poster)
We recreated the environment and have a pristine copy of the repository, and are still having the issue.
I am pasting a traceback and the sleap-diagnostic output. I'm really pretty unclear at whether there are additional steps we haven't done outside the instructions? I notice there's a homebrew recommendation in the instructions, but am not sure how that's connected to the other installation instructions.
Thank you!
Traceback (most recent call last):
File "/Users/sleapuser/opt/anaconda3/envs/sleap/lib/python3.9/site-packages/yaml/constructor.py", line 551, in find_python_name
__import__(module_name)
File "/Users/sleapuser/opt/anaconda3/envs/sleap/lib/python3.9/site-packages/shiboken2/files.dir/shibokensupport/feature.py", line 139, in _import
return original_import(name, *args, **kwargs)
ModuleNotFoundError: No module named 'PySide6'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/Users/sleapuser/opt/anaconda3/envs/sleap/bin/sleap-label", line 33, in <module>
sys.exit(load_entry_point('sleap', 'console_scripts', 'sleap-label')())
File "/Users/sleapuser/opt/anaconda3/envs/sleap/bin/sleap-label", line 25, in importlib_load_entry_point
return next(matches).load()
File "/Users/sleapuser/opt/anaconda3/envs/sleap/lib/python3.9/importlib/metadata.py", line 86, in load
module = import_module(match.group('module'))
File "/Users/sleapuser/opt/anaconda3/envs/sleap/lib/python3.9/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "<frozen importlib._bootstrap>", line 1030, in _gcd_import
File "<frozen importlib._bootstrap>", line 1007, in _find_and_load
File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 680, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 850, in exec_module
File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
File "/Users/sleapuser/Desktop/sleap/sleap/gui/app.py", line 67, in <module>
from sleap.gui.dialogs.metrics import MetricsTableDialog
File "/Users/sleapuser/opt/anaconda3/envs/sleap/lib/python3.9/site-packages/shiboken2/files.dir/shibokensupport/feature.py", line 139, in _import
return original_import(name, *args, **kwargs)
File "/Users/sleapuser/Desktop/sleap/sleap/gui/dialogs/metrics.py", line 11, in <module>
from sleap.gui.dataviews import GenericTableModel, GenericTableView
File "/Users/sleapuser/opt/anaconda3/envs/sleap/lib/python3.9/site-packages/shiboken2/files.dir/shibokensupport/feature.py", line 139, in _import
return original_import(name, *args, **kwargs)
File "/Users/sleapuser/Desktop/sleap/sleap/gui/dataviews.py", line 28, in <module>
from sleap.gui.commands import CommandContext
File "/Users/sleapuser/opt/anaconda3/envs/sleap/lib/python3.9/site-packages/shiboken2/files.dir/shibokensupport/feature.py", line 139, in _import
return original_import(name, *args, **kwargs)
File "/Users/sleapuser/Desktop/sleap/sleap/gui/commands.py", line 56, in <module>
from sleap.gui.dialogs.importvideos import ImportVideos
File "/Users/sleapuser/opt/anaconda3/envs/sleap/lib/python3.9/site-packages/shiboken2/files.dir/shibokensupport/feature.py", line 139, in _import
return original_import(name, *args, **kwargs)
File "/Users/sleapuser/Desktop/sleap/sleap/gui/dialogs/importvideos.py", line 34, in <module>
from sleap.gui.widgets.video import GraphicsView
File "/Users/sleapuser/opt/anaconda3/envs/sleap/lib/python3.9/site-packages/shiboken2/files.dir/shibokensupport/feature.py", line 139, in _import
return original_import(name, *args, **kwargs)
File "/Users/sleapuser/Desktop/sleap/sleap/gui/widgets/video.py", line 69, in <module>
from sleap.prefs import prefs
File "/Users/sleapuser/opt/anaconda3/envs/sleap/lib/python3.9/site-packages/shiboken2/files.dir/shibokensupport/feature.py", line 139, in _import
return original_import(name, *args, **kwargs)
File "/Users/sleapuser/Desktop/sleap/sleap/prefs.py", line 77, in <module>
prefs = Preferences()
File "/Users/sleapuser/Desktop/sleap/sleap/prefs.py", line 34, in __init__
self.load()
File "/Users/sleapuser/Desktop/sleap/sleap/prefs.py", line 39, in load
self.load_()
File "/Users/sleapuser/Desktop/sleap/sleap/prefs.py", line 44, in load_
self._prefs = util.get_config_yaml(self._filename)
File "/Users/sleapuser/Desktop/sleap/sleap/util.py", line 317, in get_config_yaml
return yaml.load(f, Loader=yaml.Loader)
File "/Users/sleapuser/opt/anaconda3/envs/sleap/lib/python3.9/site-packages/yaml/__init__.py", line 81, in load
return loader.get_single_data()
File "/Users/sleapuser/opt/anaconda3/envs/sleap/lib/python3.9/site-packages/yaml/constructor.py", line 51, in get_single_data
return self.construct_document(node)
File "/Users/sleapuser/opt/anaconda3/envs/sleap/lib/python3.9/site-packages/yaml/constructor.py", line 60, in construct_document
for dummy in generator:
File "/Users/sleapuser/opt/anaconda3/envs/sleap/lib/python3.9/site-packages/yaml/constructor.py", line 413, in construct_yaml_map
value = self.construct_mapping(node)
File "/Users/sleapuser/opt/anaconda3/envs/sleap/lib/python3.9/site-packages/yaml/constructor.py", line 218, in construct_mapping
return super().construct_mapping(node, deep=deep)
File "/Users/sleapuser/opt/anaconda3/envs/sleap/lib/python3.9/site-packages/yaml/constructor.py", line 143, in construct_mapping
value = self.construct_object(value_node, deep=deep)
File "/Users/sleapuser/opt/anaconda3/envs/sleap/lib/python3.9/site-packages/yaml/constructor.py", line 102, in construct_object
data = constructor(self, tag_suffix, node)
File "/Users/sleapuser/opt/anaconda3/envs/sleap/lib/python3.9/site-packages/yaml/constructor.py", line 648, in construct_python_object_apply
instance = self.make_python_instance(suffix, node, args, kwds, newobj)
File "/Users/sleapuser/opt/anaconda3/envs/sleap/lib/python3.9/site-packages/yaml/constructor.py", line 722, in make_python_instance
return super(UnsafeConstructor, self).make_python_instance(
File "/Users/sleapuser/opt/anaconda3/envs/sleap/lib/python3.9/site-packages/yaml/constructor.py", line 585, in make_python_instance
cls = self.find_python_name(suffix, node.start_mark)
File "/Users/sleapuser/opt/anaconda3/envs/sleap/lib/python3.9/site-packages/yaml/constructor.py", line 719, in find_python_name
return super(UnsafeConstructor, self).find_python_name(name, mark, unsafe=True)
File "/Users/sleapuser/opt/anaconda3/envs/sleap/lib/python3.9/site-packages/yaml/constructor.py", line 553, in find_python_name
raise ConstructorError("while constructing a Python object", mark,
yaml.constructor.ConstructorError: while constructing a Python object
cannot find module 'PySide6.QtCore' (No module named 'PySide6')
in "/Users/sleapuser/.sleap/1.2.9/preferences.yaml", line 15, column 15
And then sleap-diagnostic:
==========SYSTEM==========
utc: 2022-12-13 19:55:28.073193
python: 3.9.15
system: Darwin, arm64, 22.1.0, Darwin Kernel Version 22.1.0: Sun Oct 9 20:14:30 PDT 2022; root:xnu-8792.41.9~2/RELEASE_ARM64_T8103
path: /Users/sleapuser/opt/anaconda3/envs/sleap/bin:/Users/sleapuser/opt/anaconda3/condabin:/opt/homebrew/bin:/opt/homebrew/sbin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin
==========IMPORTS==========
sleap import: True
sleap path: /Users/sleapuser/Desktop/sleap/sleap/__init__.py
sleap version: 1.2.9
pyside2 import: True
pyside path: /Users/sleapuser/opt/anaconda3/envs/sleap/lib/python3.9/site-packages/PySide2/__init__.py
successfully created PySide2.QtWidgets.QApplication instance
pyside6 import: False
cv2 import: True
==========GIT==========
846ce932479085cbec128b235a1172f12404abc8
develop
==========TENSORFLOW==========
tensorflow import: True
tensorflow version: 2.9.2
tensorflow path: /Users/sleapuser/opt/anaconda3/envs/sleap/lib/python3.9/site-packages/tensorflow/__init__.py
gpus: [PhysicalDevice(name='/physical_device:GPU:0', device_type='GPU')]
==========CONDA==========
# packages in environment at /Users/sleapuser/opt/anaconda3/envs/sleap:
#
# Name Version Build Channel
absl-py 1.3.0 pypi_0 pypi
alabaster 0.7.12 pypi_0 pypi
anyio 3.6.2 pypi_0 pypi
aom 3.5.0 h7ea286d_0 conda-forge
appdirs 1.4.4 pypi_0 pypi
appnope 0.1.3 pypi_0 pypi
argon2-cffi 21.3.0 pypi_0 pypi
argon2-cffi-bindings 21.2.0 pypi_0 pypi
asttokens 2.2.1 pypi_0 pypi
astunparse 1.6.3 pypi_0 pypi
attrs 21.4.0 pypi_0 pypi
babel 2.11.0 pypi_0 pypi
backcall 0.2.0 pypi_0 pypi
beautifulsoup4 4.11.1 pypi_0 pypi
black 21.6b0 pypi_0 pypi
bleach 5.0.1 pypi_0 pypi
bzip2 1.0.8 h3422bc3_4 conda-forge
c-ares 1.18.1 h3422bc3_0 conda-forge
ca-certificates 2022.12.7 h4653dfc_0 conda-forge
cached-property 1.5.2 hd8ed1ab_1 conda-forge
cached_property 1.5.2 pyha770c72_1 conda-forge
cachetools 5.2.0 pypi_0 pypi
cairo 1.16.0 h73a0509_1014 conda-forge
cattrs 1.1.1 pypi_0 pypi
certifi 2021.10.8 pypi_0 pypi
cffi 1.15.1 pypi_0 pypi
cfgv 3.3.1 pypi_0 pypi
charset-normalizer 2.1.1 pypi_0 pypi
click 8.0.4 pypi_0 pypi
colorama 0.4.6 pypi_0 pypi
comm 0.1.2 pypi_0 pypi
commonmark 0.9.1 pypi_0 pypi
contourpy 1.0.6 pypi_0 pypi
coverage 6.5.0 pypi_0 pypi
cycler 0.11.0 pypi_0 pypi
debugpy 1.6.4 pypi_0 pypi
decorator 5.1.1 pypi_0 pypi
defusedxml 0.7.1 pypi_0 pypi
deprecated 1.2.13 pypi_0 pypi
distlib 0.3.6 pypi_0 pypi
docutils 0.17.1 pypi_0 pypi
efficientnet 1.0.0 pypi_0 pypi
entrypoints 0.4 pypi_0 pypi
exceptiongroup 1.0.4 pypi_0 pypi
executing 1.2.0 pypi_0 pypi
expat 2.5.0 hb7217d7_0 conda-forge
ffmpeg 4.4.2 gpl_h4ccb4f7_111 conda-forge
filelock 3.8.2 pypi_0 pypi
flatbuffers 1.12 pypi_0 pypi
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 hab24e00_0 conda-forge
fontconfig 2.14.1 h82840c6_0 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
fonttools 4.38.0 pypi_0 pypi
freetype 2.12.1 hd633e50_1 conda-forge
gast 0.4.0 pypi_0 pypi
geos 3.9.1 h9f76cd9_2 conda-forge
gettext 0.21.1 h0186832_0 conda-forge
giflib 5.2.1 h27ca646_2 conda-forge
gitdb 4.0.10 pypi_0 pypi
gitpython 3.1.29 pypi_0 pypi
glib 2.74.1 hb5ab8b9_1 conda-forge
glib-tools 2.74.1 hb5ab8b9_1 conda-forge
gmp 6.2.1 h9f76cd9_0 conda-forge
gnutls 3.7.8 h9f1a10d_0 conda-forge
google-auth 2.15.0 pypi_0 pypi
google-auth-oauthlib 0.4.6 pypi_0 pypi
google-pasta 0.2.0 pypi_0 pypi
graphite2 1.3.13 h9f76cd9_1001 conda-forge
grpc-cpp 1.48.1 haeec53e_1 conda-forge
grpcio 1.48.1 py39h8e34ec7_1 conda-forge
gst-plugins-base 1.20.3 h8b7775e_2 conda-forge
gstreamer 1.20.3 hcb7b3dd_2 conda-forge
h5py 3.6.0 nompi_py39hd982b79_100 conda-forge
harfbuzz 5.3.0 hddbc195_0 conda-forge
hdf5 1.12.1 nompi_hf9525e8_104 conda-forge
hdmf 3.4.7 pypi_0 pypi
icu 70.1 h6b3803e_0 conda-forge
identify 2.5.9 pypi_0 pypi
idna 3.4 pypi_0 pypi
image-classifiers 1.0.0 pypi_0 pypi
imageio 2.15.0 pypi_0 pypi
imagesize 1.4.1 pypi_0 pypi
imgaug 0.4.0 pypi_0 pypi
imgstore 0.2.9 pypi_0 pypi
importlib-metadata 5.1.0 pypi_0 pypi
iniconfig 1.1.1 pypi_0 pypi
ipykernel 6.19.2 pypi_0 pypi
ipython 8.7.0 pypi_0 pypi
ipython-genutils 0.2.0 pypi_0 pypi
ipywidgets 7.7.2 pypi_0 pypi
jaraco-classes 3.2.3 pypi_0 pypi
jasper 2.0.33 hba35424_0 conda-forge
jedi 0.17.2 pypi_0 pypi
jinja2 3.1.2 pypi_0 pypi
joblib 1.2.0 pypi_0 pypi
jpeg 9e he4db4b2_2 conda-forge
jsmin 3.0.1 pypi_0 pypi
json5 0.9.10 pypi_0 pypi
jsonpickle 1.2 pypi_0 pypi
jsonschema 4.17.3 pypi_0 pypi
jupyter-cache 0.4.3 pypi_0 pypi
jupyter-client 7.4.8 pypi_0 pypi
jupyter-core 5.1.0 pypi_0 pypi
jupyter-server 1.13.5 pypi_0 pypi
jupyter-server-mathjax 0.2.6 pypi_0 pypi
jupyter-sphinx 0.3.2 pypi_0 pypi
jupyterlab 3.3.4 pypi_0 pypi
jupyterlab-pygments 0.2.2 pypi_0 pypi
jupyterlab-server 2.16.3 pypi_0 pypi
jupyterlab-widgets 1.1.1 pypi_0 pypi
keras 2.9.0 pypi_0 pypi
keras-applications 1.0.8 pypi_0 pypi
keras-preprocessing 1.1.2 pypi_0 pypi
keyring 23.11.0 pypi_0 pypi
kiwisolver 1.4.4 pypi_0 pypi
krb5 1.19.3 hf9b2bbe_0 conda-forge
lame 3.100 h1a8c8d9_1003 conda-forge
lerc 4.0.0 h9a09cb3_0 conda-forge
libabseil 20220623.0 cxx17_h28b99d4_6 conda-forge
libblas 3.9.0 16_osxarm64_openblas conda-forge
libcblas 3.9.0 16_osxarm64_openblas conda-forge
libclang 14.0.6 pypi_0 pypi
libclang13 14.0.6 default_he70ec0d_0 conda-forge
libcurl 7.86.0 hd538317_1 conda-forge
libcxx 14.0.6 h2692d47_0 conda-forge
libdeflate 1.14 h1a8c8d9_0 conda-forge
libedit 3.1.20191231 hc8eb9b7_2 conda-forge
libev 4.33 h642e427_1 conda-forge
libffi 3.4.2 h3422bc3_5 conda-forge
libgfortran 5.0.0 11_3_0_hd922786_26 conda-forge
libgfortran5 11.3.0 hdaf2cc0_26 conda-forge
libglib 2.74.1 h4646484_1 conda-forge
libiconv 1.17 he4db4b2_0 conda-forge
libidn2 2.3.4 h1a8c8d9_0 conda-forge
liblapack 3.9.0 16_osxarm64_openblas conda-forge
liblapacke 3.9.0 16_osxarm64_openblas conda-forge
libllvm14 14.0.6 hf6e71e7_1 conda-forge
libnghttp2 1.47.0 h232270b_1 conda-forge
libogg 1.3.4 h27ca646_1 conda-forge
libopenblas 0.3.21 openmp_hc731615_3 conda-forge
libopencv 4.6.0 py39hb16ced2_2 conda-forge
libopus 1.3.1 h27ca646_1 conda-forge
libpng 1.6.39 h76d750c_0 conda-forge
libpq 14.5 hb650857_3 conda-forge
libprotobuf 3.20.2 hb5ab8b9_0 conda-forge
libsqlite 3.40.0 h76d750c_0 conda-forge
libssh2 1.10.0 hb80f160_3 conda-forge
libtasn1 4.19.0 h1a8c8d9_0 conda-forge
libtiff 4.4.0 hfa0b094_4 conda-forge
libunistring 0.9.10 h3422bc3_0 conda-forge
libvorbis 1.3.7 h9f76cd9_0 conda-forge
libvpx 1.11.0 hc470f4d_3 conda-forge
libwebp 1.2.4 h328b37c_0 conda-forge
libwebp-base 1.2.4 h57fd34a_0 conda-forge
libxml2 2.10.3 h87b0503_0 conda-forge
libxslt 1.1.37 h1bd8bc4_0 conda-forge
libzlib 1.2.13 h03a7124_4 conda-forge
linkify-it-py 2.0.0 pypi_0 pypi
livereload 2.6.3 pypi_0 pypi
llvm-openmp 15.0.6 h7cfbb63_0 conda-forge
lxml 4.9.1 pypi_0 pypi
markdown 3.4.1 pypi_0 pypi
markdown-it-py 1.1.0 pypi_0 pypi
markupsafe 2.1.1 pypi_0 pypi
matplotlib 3.6.2 pypi_0 pypi
matplotlib-inline 0.1.6 pypi_0 pypi
mdit-py-plugins 0.2.8 pypi_0 pypi
mistune 0.8.4 pypi_0 pypi
more-itertools 9.0.0 pypi_0 pypi
mypy-extensions 0.4.3 pypi_0 pypi
mysql-common 8.0.31 hab468bb_0 conda-forge
mysql-libs 8.0.31 hea58576_0 conda-forge
myst-nb 0.13.2 pypi_0 pypi
myst-parser 0.15.2 pypi_0 pypi
nbclassic 0.4.8 pypi_0 pypi
nbclient 0.5.13 pypi_0 pypi
nbconvert 6.5.4 pypi_0 pypi
nbdime 3.1.1 pypi_0 pypi
nbformat 5.1.3 pypi_0 pypi
ncurses 6.3 h07bb92c_1 conda-forge
ndx-pose 0.1.1 pypi_0 pypi
nest-asyncio 1.5.6 pypi_0 pypi
nettle 3.8.1 h63371fa_1 conda-forge
networkx 2.8.8 pypi_0 pypi
nodeenv 1.7.0 pypi_0 pypi
notebook 6.5.2 pypi_0 pypi
notebook-shim 0.2.2 pypi_0 pypi
nspr 4.35 hb7217d7_0 conda-forge
nss 3.78 h1483a63_0 conda-forge
numpy 1.22.3 py39h64940a9_2 conda-forge
oauthlib 3.2.2 pypi_0 pypi
opencv 4.6.0 py39hdf13c20_2 conda-forge
openh264 2.3.1 hb7217d7_1 conda-forge
openssl 1.1.1s h03a7124_1 conda-forge
opt-einsum 3.3.0 pypi_0 pypi
p11-kit 0.24.1 h29577a5_0 conda-forge
packaging 22.0 pyhd8ed1ab_0 conda-forge
pandas 1.5.2 pypi_0 pypi
pandocfilters 1.5.0 pypi_0 pypi
parso 0.7.1 pypi_0 pypi
pathspec 0.10.3 pypi_0 pypi
pcre2 10.40 hb34f9b4_0 conda-forge
pexpect 4.8.0 pypi_0 pypi
pickleshare 0.7.5 pypi_0 pypi
pillow 8.4.0 pypi_0 pypi
pip 22.3.1 pyhd8ed1ab_0 conda-forge
pixman 0.40.0 h27ca646_0 conda-forge
pkginfo 1.9.2 pypi_0 pypi
platformdirs 2.6.0 pypi_0 pypi
pluggy 1.0.0 pypi_0 pypi
pre-commit 2.20.0 pypi_0 pypi
prometheus-client 0.15.0 pypi_0 pypi
prompt-toolkit 3.0.36 pypi_0 pypi
protobuf 3.19.6 pypi_0 pypi
psutil 5.9.4 pypi_0 pypi
ptyprocess 0.7.0 pypi_0 pypi
pure-eval 0.2.2 pypi_0 pypi
py-opencv 4.6.0 py39hfa6204d_2 conda-forge
pyasn1 0.4.8 pypi_0 pypi
pyasn1-modules 0.2.8 pypi_0 pypi
pycparser 2.21 pypi_0 pypi
pydata-sphinx-theme 0.8.1 pypi_0 pypi
pygithub 1.57 pypi_0 pypi
pygments 2.13.0 pypi_0 pypi
pyjwt 2.6.0 pypi_0 pypi
pykalman 0.9.5 pypi_0 pypi
pynacl 1.5.0 pypi_0 pypi
pynwb 2.2.0 pypi_0 pypi
pyparsing 3.0.9 pypi_0 pypi
pyrsistent 0.19.2 pypi_0 pypi
pyside2 5.15.5 py39h46bc059_1 conda-forge
pytest 7.2.0 pypi_0 pypi
pytest-cov 3.0.0 pypi_0 pypi
pytest-qt 4.2.0 pypi_0 pypi
pytest-xvfb 2.0.0 pypi_0 pypi
python 3.9.15 h2d96c93_0_cpython conda-forge
python-dateutil 2.8.2 pypi_0 pypi
python-rapidjson 1.9 pypi_0 pypi
python_abi 3.9 3_cp39 conda-forge
pytz 2022.6 pypi_0 pypi
pytz-deprecation-shim 0.1.0.post0 pypi_0 pypi
pyvirtualdisplay 3.0 pypi_0 pypi
pywavelets 1.4.1 pypi_0 pypi
pyyaml 6.0 pypi_0 pypi
pyzmq 24.0.1 pypi_0 pypi
qimage2ndarray 1.9.0 pypi_0 pypi
qt-main 5.15.6 h96bf0dc_0 conda-forge
qt-webengine 5.15.4 h43c6231_3 conda-forge
qtpy 2.3.0 pyhd8ed1ab_0 conda-forge
re2 2022.06.01 h9a09cb3_1 conda-forge
readline 8.1.2 h46ed386_0 conda-forge
readme-renderer 37.3 pypi_0 pypi
regex 2022.10.31 pypi_0 pypi
requests 2.28.1 pypi_0 pypi
requests-oauthlib 1.3.1 pypi_0 pypi
requests-toolbelt 0.10.1 pypi_0 pypi
rfc3986 2.0.0 pypi_0 pypi
rich 10.16.1 pypi_0 pypi
rsa 4.9 pypi_0 pypi
ruamel-yaml 0.17.21 pypi_0 pypi
ruamel-yaml-clib 0.2.7 pypi_0 pypi
scikit-image 0.19.3 pypi_0 pypi
scikit-learn 1.0.2 pypi_0 pypi
scikit-video 1.1.11 pypi_0 pypi
scipy 1.7.3 py39h18313fe_1 conda-forge
seaborn 0.12.1 pypi_0 pypi
segmentation-models 1.0.1 pypi_0 pypi
send2trash 1.8.0 pypi_0 pypi
setuptools 65.5.1 pyhd8ed1ab_0 conda-forge
shapely 1.7.1 py39he81bf5d_5 conda-forge
six 1.15.0 pypi_0 pypi
sleap 1.2.9 dev_0 <develop>
smmap 5.0.0 pypi_0 pypi
sniffio 1.3.0 pypi_0 pypi
snowballstemmer 2.2.0 pypi_0 pypi
soupsieve 2.3.2.post1 pypi_0 pypi
sphinx 4.5.0 pypi_0 pypi
sphinx-autobuild 2021.3.14 pypi_0 pypi
sphinx-book-theme 0.3.3 pypi_0 pypi
sphinx-copybutton 0.5.1 pypi_0 pypi
sphinx-togglebutton 0.3.2 pypi_0 pypi
sphinxcontrib-applehelp 1.0.2 pypi_0 pypi
sphinxcontrib-devhelp 1.0.2 pypi_0 pypi
sphinxcontrib-htmlhelp 2.0.0 pypi_0 pypi
sphinxcontrib-jsmath 1.0.1 pypi_0 pypi
sphinxcontrib-qthelp 1.0.3 pypi_0 pypi
sphinxcontrib-serializinghtml 1.1.5 pypi_0 pypi
sqlalchemy 1.4.45 pypi_0 pypi
sqlite 3.40.0 h2229b38_0 conda-forge
stack-data 0.6.2 pypi_0 pypi
svt-av1 1.4.0 h7ea286d_0 conda-forge
tensorboard 2.9.1 pypi_0 pypi
tensorboard-data-server 0.6.1 pypi_0 pypi
tensorboard-plugin-wit 1.8.1 pypi_0 pypi
tensorflow-deps 2.9.0 0 apple
tensorflow-estimator 2.9.0 pypi_0 pypi
tensorflow-macos 2.9.2 pypi_0 pypi
tensorflow-metal 0.5.0 pypi_0 pypi
termcolor 2.1.1 pypi_0 pypi
terminado 0.17.1 pypi_0 pypi
threadpoolctl 3.1.0 pypi_0 pypi
tifffile 2022.10.10 pypi_0 pypi
tinycss2 1.2.1 pypi_0 pypi
tk 8.6.12 he1e0b03_0 conda-forge
toml 0.10.2 pypi_0 pypi
tomli 2.0.1 pypi_0 pypi
tornado 6.2 pypi_0 pypi
tqdm 4.64.1 pypi_0 pypi
traitlets 5.7.1 pypi_0 pypi
twine 3.3.0 pypi_0 pypi
typing-extensions 4.4.0 pypi_0 pypi
tzdata 2022.7 pypi_0 pypi
tzlocal 4.2 pypi_0 pypi
uc-micro-py 1.0.1 pypi_0 pypi
urllib3 1.26.13 pypi_0 pypi
virtualenv 20.17.1 pypi_0 pypi
wcwidth 0.2.5 pypi_0 pypi
webencodings 0.5.1 pypi_0 pypi
websocket-client 1.4.2 pypi_0 pypi
werkzeug 2.2.2 pypi_0 pypi
wheel 0.38.4 pyhd8ed1ab_0 conda-forge
widgetsnbextension 3.6.1 pypi_0 pypi
wrapt 1.14.1 pypi_0 pypi
x264 1!164.3095 h57fd34a_2 conda-forge
x265 3.5 hbc6ce65_3 conda-forge
xz 5.2.6 h57fd34a_0 conda-forge
zipp 3.11.0 pypi_0 pypi
zlib 1.2.13 h03a7124_4 conda-forge
zstd 1.5.2 h8128057_4 conda-forge
==========PIP==========
absl-py==1.3.0
alabaster==0.7.12
anyio==3.6.2
appdirs==1.4.4
appnope==0.1.3
argon2-cffi==21.3.0
argon2-cffi-bindings==21.2.0
asttokens==2.2.1
astunparse==1.6.3
attrs==21.4.0
Babel==2.11.0
backcall==0.2.0
beautifulsoup4==4.11.1
black==21.6b0
bleach==5.0.1
cached-property @ file:///home/conda/feedstock_root/build_artifacts/cached_property_1615209429212/work
cachetools==5.2.0
cattrs==1.1.1
certifi==2021.10.8
cffi==1.15.1
cfgv==3.3.1
charset-normalizer==2.1.1
click==8.0.4
colorama==0.4.6
comm==0.1.2
commonmark==0.9.1
contourpy==1.0.6
coverage==6.5.0
cycler==0.11.0
debugpy==1.6.4
decorator==5.1.1
defusedxml==0.7.1
Deprecated==1.2.13
distlib==0.3.6
docutils==0.17.1
efficientnet==1.0.0
entrypoints==0.4
exceptiongroup==1.0.4
executing==1.2.0
filelock==3.8.2
flatbuffers==1.12
fonttools==4.38.0
gast==0.4.0
gitdb==4.0.10
GitPython==3.1.29
google-auth==2.15.0
google-auth-oauthlib==0.4.6
google-pasta==0.2.0
grpcio @ file:///Users/runner/miniforge3/conda-bld/grpc-split_1662408190496/work
h5py @ file:///Users/runner/miniforge3/conda-bld/h5py_1637964045648/work
hdmf==3.4.7
identify==2.5.9
idna==3.4
image-classifiers==1.0.0
imageio==2.15.0
imagesize==1.4.1
imgaug==0.4.0
imgstore==0.2.9
importlib-metadata==5.1.0
iniconfig==1.1.1
ipykernel==6.19.2
ipython==8.7.0
ipython-genutils==0.2.0
ipywidgets==7.7.2
jaraco.classes==3.2.3
jedi==0.17.2
Jinja2==3.1.2
joblib==1.2.0
jsmin==3.0.1
json5==0.9.10
jsonpickle==1.2
jsonschema==4.17.3
jupyter-cache==0.4.3
jupyter-server==1.13.5
jupyter-server-mathjax==0.2.6
jupyter-sphinx==0.3.2
jupyter_client==7.4.8
jupyter_core==5.1.0
jupyterlab==3.3.4
jupyterlab-pygments==0.2.2
jupyterlab-widgets==1.1.1
jupyterlab_server==2.16.3
keras==2.9.0
Keras-Applications==1.0.8
Keras-Preprocessing==1.1.2
keyring==23.11.0
kiwisolver==1.4.4
libclang==14.0.6
linkify-it-py==2.0.0
livereload==2.6.3
lxml==4.9.1
Markdown==3.4.1
markdown-it-py==1.1.0
MarkupSafe==2.1.1
matplotlib==3.6.2
matplotlib-inline==0.1.6
mdit-py-plugins==0.2.8
mistune==0.8.4
more-itertools==9.0.0
mypy-extensions==0.4.3
myst-nb==0.13.2
myst-parser==0.15.2
nbclassic==0.4.8
nbclient==0.5.13
nbconvert==6.5.4
nbdime==3.1.1
nbformat==5.1.3
ndx-pose==0.1.1
nest-asyncio==1.5.6
networkx==2.8.8
nodeenv==1.7.0
notebook==6.5.2
notebook_shim==0.2.2
numpy @ file:///Users/runner/miniforge3/conda-bld/numpy_1651020584890/work
oauthlib==3.2.2
opencv-python==4.6.0
opt-einsum==3.3.0
packaging @ file:///home/conda/feedstock_root/build_artifacts/packaging_1670530880680/work
pandas==1.5.2
pandocfilters==1.5.0
parso==0.7.1
pathspec==0.10.3
pexpect==4.8.0
pickleshare==0.7.5
Pillow==8.4.0
pkginfo==1.9.2
platformdirs==2.6.0
pluggy==1.0.0
pre-commit==2.20.0
prometheus-client==0.15.0
prompt-toolkit==3.0.36
protobuf==3.19.6
psutil==5.9.4
ptyprocess==0.7.0
pure-eval==0.2.2
pyasn1==0.4.8
pyasn1-modules==0.2.8
pycparser==2.21
pydata-sphinx-theme==0.8.1
PyGithub==1.57
Pygments==2.13.0
PyJWT==2.6.0
pykalman==0.9.5
PyNaCl==1.5.0
pynwb==2.2.0
pyparsing==3.0.9
pyrsistent==0.19.2
PySide2==5.15.5
pytest==7.2.0
pytest-cov==3.0.0
pytest-qt==4.2.0
pytest-xvfb==2.0.0
python-dateutil==2.8.2
python-rapidjson==1.9
pytz==2022.6
pytz-deprecation-shim==0.1.0.post0
PyVirtualDisplay==3.0
PyWavelets==1.4.1
PyYAML==6.0
pyzmq==24.0.1
qimage2ndarray==1.9.0
QtPy @ file:///home/conda/feedstock_root/build_artifacts/qtpy_1667873092748/work
readme-renderer==37.3
regex==2022.10.31
requests==2.28.1
requests-oauthlib==1.3.1
requests-toolbelt==0.10.1
rfc3986==2.0.0
rich==10.16.1
rsa==4.9
ruamel.yaml==0.17.21
ruamel.yaml.clib==0.2.7
scikit-image==0.19.3
scikit-learn==1.0.2
scikit-video==1.1.11
SciPy @ file:///Users/runner/miniforge3/conda-bld/scipy_1667960661844/work
seaborn==0.12.1
segmentation-models==1.0.1
Send2Trash==1.8.0
Shapely @ file:///Users/runner/miniforge3/conda-bld/shapely_1622660864412/work
shiboken2==5.15.5
six==1.15.0
-e git+https://github.com/talmolab/sleap/@846ce932479085cbec128b235a1172f12404abc8#egg=sleap
smmap==5.0.0
sniffio==1.3.0
snowballstemmer==2.2.0
soupsieve==2.3.2.post1
Sphinx==4.5.0
sphinx-autobuild==2021.3.14
sphinx-book-theme==0.3.3
sphinx-copybutton==0.5.1
sphinx-togglebutton==0.3.2
sphinxcontrib-applehelp==1.0.2
sphinxcontrib-devhelp==1.0.2
sphinxcontrib-htmlhelp==2.0.0
sphinxcontrib-jsmath==1.0.1
sphinxcontrib-qthelp==1.0.3
sphinxcontrib-serializinghtml==1.1.5
SQLAlchemy==1.4.45
stack-data==0.6.2
tensorboard==2.9.1
tensorboard-data-server==0.6.1
tensorboard-plugin-wit==1.8.1
tensorflow-estimator==2.9.0
tensorflow-macos==2.9.2
tensorflow-metal==0.5.0
termcolor==2.1.1
terminado==0.17.1
threadpoolctl==3.1.0
tifffile==2022.10.10
tinycss2==1.2.1
toml==0.10.2
tomli==2.0.1
tornado==6.2
tqdm==4.64.1
traitlets==5.7.1
twine==3.3.0
typing_extensions==4.4.0
tzdata==2022.7
tzlocal==4.2
uc-micro-py==1.0.1
urllib3==1.26.13
virtualenv==20.17.1
wcwidth==0.2.5
webencodings==0.5.1
websocket-client==1.4.2
Werkzeug==2.2.2
widgetsnbextension==3.6.1
wrapt==1.14.1
zipp==3.11.0
==========NVIDIA==========
unable to locate nvidia-smi
Hi @shwan19, @kdquine,
So it looks like you have PySide2 installed (PySide6 is not installed).
Can you try the sleap-label --reset
command and let me know if that works?
I suspect that your /Users/sleapuser/.sleap/1.2.9/preferences.yaml
lists PySide6
in the window_state
parameter where is should list PySide2
as shown below:
window state: !!python/object/apply:PySide2.QtCore.QByteArray
Using the --reset
option will reset preferences which should hopefully fix things.
Thanks, Liezl
Success!
We had almost gotten sleap running through a lot of fiddling with library versions at an earlier point, and as you suspected, one of the preference files then referenced QtCore6. After deleting preferences, we can now load sleap without issue!
Thank you so much!
We were trying to install sleap on an Apple M1 laptop.
We followed the given instructions with the exception of using anaconda for M1 (already installed) instead of miniconda for M1, but after the installation steps complete and we attempt to launch sleap-label, we run into an error relating to PySide6 not being available.
Guidance would be appreciated!