Add option to analysis export for exporting predictions for all frames including those with no predictions

[vtsai881]

Description

Previously, SLEAP-exported analysis csvs only included rows in which there was a predicted instance, meaning imports into downstream behavioral classification pipelines (e.g. SimBA), lack rows for frames that are missing tracking predictions. These set of changes to write_tracking_h5.py and the GUI add an option to the csv export menu to export with rows for all frames (frames with no predictions will be filled with 0).

Location of added buttons below:

Types of changes

• [ ] Bugfix
• [ ] New feature
• [ ] Refactor / Code style update (no logical changes)
• [ ] Build / CI changes
• [ ] Documentation Update
• [x] Other (flexibility/integratability with downstream programs)

Does this address any currently open issues?

#1622

Outside contributors checklist

• [x] Review the guidelines for contributing to this repository
• [ ] Read and sign the CLA and add yourself to the authors list
• [ ] Make sure you are making a pull request against the develop branch (not main). Also you should start your branch off develop
• [ ] Add tests that prove your fix is effective or that your feature works
• [ ] Add necessary documentation (if appropriate)

Thank you for contributing to SLEAP!

:heart:

Summary by CodeRabbit

• New Features

  • Introduced new export options for CSV files, allowing users to export data for all frames or only tracked frames, applicable to both current and all videos.

• Enhancements

  • Updated export functions to support the inclusion of all frames in analysis files and CSV exports.

[coderabbitai[bot]]

Walkthrough

The recent updates to SLEAP focus on enhancing CSV export functionality. New menu items have been added for exporting CSVs with options to include all frames or only tracked ones, across current or all videos. The exportAnalysisFile and exportCSVFile methods now accept an all_frames boolean to toggle this feature. The write functions across various modules have been updated to support this parameter, streamlining the export process and providing users with more tailored data extraction.

Changes

File Path	Change Summary
sleap/gui/app.py sleap/gui/commands.py	Added menu items for CSV export with options for current/all videos and tracked/all frames. Updated exportAnalysisFile and exportCSVFile methods to include all_frames parameter.
sleap/info/write_tracking_h5.py sleap/io/format/csv.py sleap/io/format/nix.py sleap/io/format/sleap_analysis.py	Adjusted various functions and methods to include or handle the all_frames parameter for CSV export.

🐇✨ In the land of code and bytes, A rabbit hopped through data nights. With CSVs now finely tuned, Export dreams are now festooned. 🌟📊

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