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talmolab / sleap

A deep learning framework for multi-animal pose tracking.
https://sleap.ai
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Update to new TensorFlow conda package #1726

Closed eberrigan closed 5 months ago

eberrigan commented 6 months ago

Description

Notes:

Types of changes

Does this address any currently open issues?

1721

Outside contributors checklist

Thank you for contributing to SLEAP!

:heart:

Summary by CodeRabbit

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Commits Files that changed from the base of the PR and between f0f8462567dd3ba9c86dd5c740eb8074b8683764 and 1960cf85b789dfd3d6ca46e182ef862672a0aa06.

Walkthrough

The changes made across various files aim to enhance compatibility, update dependencies, and refine functionality. These adjustments include modifying dependencies, updating version constraints, and refining scripts to address potential issues and improve the overall build and runtime environment.

Changes

Files Change Summary
.conda/bld.bat, .conda/build.sh Removed --no-binary option for qudida,albumentations in pip install command.
.conda/meta.yaml, pypi_requirements.txt,
.conda_mac/meta.yaml		 Added qudida, albumentations, ndx-pose; updated version constraints; adjusted build number.
requirements.txt Updated versions; removed ndx-pose, albumentations; added tensorflow-hub for specific platforms.
sleap/nn/data/augmentation.py,
tests/nn/data/test_augmentation.py		 Modified uniform_noise function; added tests for AlbumentationsAugmenter.
environment.yml, environment_no_cuda.yml Updated tensorflow version constraint.
sleap/version.py Updated version number from "1.3.3" to "1.4.0".
.github/workflows/build.yml,
.github/workflows/ci.yml		 Updated macOS version in matrix configuration.
environment_mac.yml Added importlib-metadata; updated networkx; commented out tensorflow-hub.
.conda/condarc.yaml Added a commented-out channel link for sleap.

Possibly related issues

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codecov[bot] commented 6 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 73.31%. Comparing base (bc69dd0) to head (1960cf8).

Additional details and impacted files ```diff @@ Coverage Diff @@ ## develop #1726 +/- ## ======================================== Coverage 73.30% 73.31% ======================================== Files 134 134 Lines 24087 24087 ======================================== + Hits 17658 17659 +1 + Misses 6429 6428 -1 ```

:umbrella: View full report in Codecov by Sentry.
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