talmolab / sleap

A deep learning framework for multi-animal pose tracking.
https://sleap.ai
Other
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(4a -> 4) Add menu to assign an `Instance` to an `InstanceGroup` #1747

Closed ramizhajj1 closed 5 months ago

ramizhajj1 commented 5 months ago

Add menu to assign an Instance to an InstanceGroup

Using the workflow above (but with less detailed write-up), please also:

**Figure 2**: GUI elements for assigning `Instance`s to `InstanceGroup`s will be similar to how we assign `Instance`s to `Track`s. ## Summary by CodeRabbit - **New Features** - Added a workaround to manage OpenCV package versions across different platforms. - Introduced new keyboard shortcuts for easier navigation within the application. - Enhanced functionalities for managing recording sessions and instance groups in the GUI. - **Bug Fixes** - Fixed typo and improved error handling in various modules. - **Documentation** - Updated installation instructions to include steps for handling specific OpenCV versions. - Added comments to clarify the use of certain testing tools. - **Refactor** - Reorganized code and updated method signatures in several modules to improve performance and maintainability. - **Tests** - Added new tests for camera and dataset functionalities to ensure reliability.
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Walkthrough

This update involves a significant overhaul focused on managing OpenCV versions and enhancing the functionality of the SLEAP application. It includes a hack to ensure compatibility with a specific OpenCV version across different platforms and scripts. Additionally, new features and improvements in the GUI, error handling, and data processing for camera and dataset management have been added, alongside updated testing frameworks to support these changes.

Changes

Files Change Summary
.conda/bld.bat, .conda/build.sh, .conda_mac/build.sh Added hack to manage OpenCV versions.
.github/workflows/ci.yml Updated CI workflow to handle OpenCV version.
dev_requirements.txt Added comment on pytest-xvfb.
docs/installation.md Included instructions for OpenCV version management hack.
environment.yml, environment_no_cuda.yml, requirements.txt Updated OpenCV dependencies.
sleap/config/shortcuts.yaml Added new keyboard shortcuts.
sleap/gui/..., sleap/io/..., sleap/instance.py Enhanced GUI and backend functionalities for better management.
tests/... Expanded tests to cover new functionalities.

🐰✨ In the code's garden, changes bloom, A rabbit hops through, room by room. With a hack here and a tweak there, New paths unfold with utmost care. Cheers to the craft, so deftly spun, Under the code moon, or the script sun. πŸŒ™πŸŒž 🐰✨


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codecov[bot] commented 5 months ago

Codecov Report

Attention: Patch coverage is 79.06977% with 18 lines in your changes are missing coverage. Please review.

Project coverage is 74.12%. Comparing base (3cb6fc7) to head (d39b9f2).

:exclamation: Current head d39b9f2 differs from pull request most recent head 22e3bdb. Consider uploading reports for the commit 22e3bdb to get more accurate results

Files Patch % Lines
sleap/gui/commands.py 77.08% 11 Missing :warning:
sleap/gui/app.py 73.91% 6 Missing :warning:
sleap/io/cameras.py 93.33% 1 Missing :warning:
Additional details and impacted files ```diff @@ Coverage Diff @@ ## liezl/add-gui-elements-for-sessions #1747 +/- ## ======================================================================= + Coverage 74.11% 74.12% +0.01% ======================================================================= Files 135 135 Lines 25103 25182 +79 ======================================================================= + Hits 18605 18667 +62 - Misses 6498 6515 +17 ```

:umbrella: View full report in Codecov by Sentry.
:loudspeaker: Have feedback on the report? Share it here.