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talmolab / sleap

A deep learning framework for multi-animal pose tracking.
https://sleap.ai
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Error re-opening project #1834

Open maia-g opened 6 days ago

maia-g commented 6 days ago

Bug description

sleap fails to reopen a project I was previously working on, but other previous projects still open

Expected behaviour

entered sleap, then clicked to open a project and navigated to the correct file "best_model_sharks.slp", thought it would open up so I could continue labeling (I had been working on it earlier in the morning)

Actual behaviour

project fails to open, gives me the following error: "TypeError: Np file format adaptor could read this file."

Your personal set up

Environment packages ``` # paste output of `pip freeze` or `conda list` here ``` (sleap) C:\Users\mhg29>conda list # packages in environment at C:\Users\mhg29\mambaforge\envs\sleap: # # Name Version Build Channel absl-py 1.0.0 pypi_0 pypi astunparse 1.6.3 pypi_0 pypi attrs 21.4.0 pyhd8ed1ab_0 conda-forge backports-zoneinfo 0.2.1 pypi_0 pypi blosc 1.21.5 hdccc3a2_0 conda-forge brotli 1.0.9 hcfcfb64_9 conda-forge brotli-bin 1.0.9 hcfcfb64_9 conda-forge bzip2 1.0.8 hcfcfb64_5 conda-forge c-blosc2 2.12.0 h183a6f4_0 conda-forge ca-certificates 2024.6.2 h56e8100_0 conda-forge cached-property 1.5.2 pypi_0 pypi cachetools 4.2.4 pypi_0 pypi cattrs 1.1.1 pyhd8ed1ab_0 conda-forge certifi 2024.6.2 pyhd8ed1ab_0 conda-forge cfitsio 4.0.0 hd67004f_0 conda-forge charls 2.3.4 h39d44d4_0 conda-forge charset-normalizer 2.0.9 pypi_0 pypi cloudpickle 2.2.1 pyhd8ed1ab_0 conda-forge cuda-nvcc 11.3.58 hb8d16a4_0 nvidia cudatoolkit 11.3.1 hf2f0253_13 conda-forge cudnn 8.2.1.32 h754d62a_0 conda-forge cycler 0.11.0 pyhd8ed1ab_0 conda-forge cytoolz 0.12.0 py37hcc03f2d_0 conda-forge dask-core 2022.2.0 pyhd8ed1ab_0 conda-forge efficientnet 1.0.0 pypi_0 pypi flatbuffers 2.0 pypi_0 pypi fonttools 4.38.0 py37h51bd9d9_0 conda-forge freeglut 3.2.2 h63175ca_2 conda-forge freetype 2.12.1 hdaf720e_2 conda-forge fsspec 2023.1.0 pyhd8ed1ab_0 conda-forge gast 0.4.0 pypi_0 pypi geos 3.11.0 h39d44d4_0 conda-forge giflib 5.2.2 h64bf75a_0 conda-forge google-auth 2.3.3 pypi_0 pypi google-auth-oauthlib 0.4.6 pypi_0 pypi google-pasta 0.2.0 pypi_0 pypi grpcio 1.43.0 pypi_0 pypi h5py 3.1.0 pypi_0 pypi hdmf 3.6.1 pypi_0 pypi icu 69.1 h0e60522_0 conda-forge idna 3.3 pypi_0 pypi image-classifiers 1.0.0 pypi_0 pypi imagecodecs 2021.11.20 py37hfea8715_2 conda-forge imageio 2.34.1 pyh4b66e23_0 conda-forge imgaug 0.4.0 pyhd8ed1ab_1 conda-forge imgstore 0.2.9 pypi_0 pypi importlib-metadata 4.10.0 pypi_0 pypi importlib-resources 5.12.0 pypi_0 pypi intel-openmp 2024.1.0 h57928b3_966 conda-forge jasper 2.0.33 hc2e4405_1 conda-forge joblib 1.3.2 pyhd8ed1ab_0 conda-forge jpeg 9e hcfcfb64_3 conda-forge jsmin 3.0.1 pyhd8ed1ab_0 conda-forge jsonpickle 1.2 py_0 conda-forge jsonschema 4.17.3 pypi_0 pypi jxrlib 1.1 hcfcfb64_3 conda-forge keras 2.7.0 pypi_0 pypi keras-applications 1.0.8 pypi_0 pypi keras-preprocessing 1.1.2 pypi_0 pypi kiwisolver 1.4.4 py37h8c56517_0 conda-forge krb5 1.20.1 h6609f42_0 conda-forge lcms2 2.14 h90d422f_0 conda-forge lerc 3.0 h0e60522_0 conda-forge libaec 1.1.3 h63175ca_0 conda-forge libblas 3.9.0 22_win64_mkl conda-forge libbrotlicommon 1.0.9 hcfcfb64_9 conda-forge libbrotlidec 1.0.9 hcfcfb64_9 conda-forge libbrotlienc 1.0.9 hcfcfb64_9 conda-forge libcblas 3.9.0 22_win64_mkl conda-forge libclang 12.0.0 pypi_0 pypi libcurl 8.1.2 h68f0423_0 conda-forge libdeflate 1.10 h8ffe710_0 conda-forge libhwloc 2.10.0 default_h8125262_1001 conda-forge libiconv 1.17 hcfcfb64_2 conda-forge liblapack 3.9.0 22_win64_mkl conda-forge liblapacke 3.9.0 22_win64_mkl conda-forge libopencv 4.5.1 py37ha0199f4_0 conda-forge libpng 1.6.43 h19919ed_0 conda-forge libprotobuf 3.21.8 h12be248_0 conda-forge libsodium 1.0.18 h8d14728_1 conda-forge libsqlite 3.46.0 h2466b09_0 conda-forge libssh2 1.10.0 h680486a_3 conda-forge libtiff 4.4.0 hc4061b1_0 conda-forge libwebp-base 1.4.0 hcfcfb64_0 conda-forge libxcb 1.13 hcd874cb_1004 conda-forge libxml2 2.12.7 h283a6d9_1 conda-forge libxslt 1.1.39 h3df6e99_0 conda-forge libzlib 1.2.13 h2466b09_6 conda-forge libzopfli 1.0.3 h0e60522_0 conda-forge locket 1.0.0 pyhd8ed1ab_0 conda-forge lz4-c 1.9.3 h8ffe710_1 conda-forge m2w64-gcc-libgfortran 5.3.0 6 conda-forge m2w64-gcc-libs 5.3.0 7 conda-forge m2w64-gcc-libs-core 5.3.0 7 conda-forge m2w64-gmp 6.1.0 2 conda-forge m2w64-libwinpthread-git 5.0.0.4634.697f757 2 conda-forge markdown 3.3.6 pypi_0 pypi markdown-it-py 2.2.0 pyhd8ed1ab_0 conda-forge matplotlib-base 3.5.3 py37hbaab90a_2 conda-forge mdurl 0.1.2 pyhd8ed1ab_0 conda-forge mkl 2024.1.0 h66d3029_692 conda-forge msys2-conda-epoch 20160418 1 conda-forge munkres 1.1.4 pyh9f0ad1d_0 conda-forge ndx-pose 0.1.1 pypi_0 pypi networkx 2.6.3 pyhd8ed1ab_1 conda-forge nixio 1.5.3 pypi_0 pypi numpy 1.19.5 pypi_0 pypi oauthlib 3.1.1 pypi_0 pypi opencv 4.5.1 py37h03978a9_0 conda-forge opencv-python-headless 4.2.0.34 pypi_0 pypi openjpeg 2.5.0 hc9384bd_1 conda-forge openssl 1.1.1w hcfcfb64_0 conda-forge opt-einsum 3.3.0 pypi_0 pypi packaging 21.3 pypi_0 pypi pandas 1.3.5 py37h9386db6_0 conda-forge partd 1.4.1 pyhd8ed1ab_0 conda-forge patsy 0.5.6 pyhd8ed1ab_0 conda-forge pillow 9.2.0 py37h42a8222_2 conda-forge pip 24.0 pyhd8ed1ab_0 conda-forge pkgutil-resolve-name 1.3.10 pypi_0 pypi protobuf 3.19.1 pypi_0 pypi psutil 5.9.3 py37h51bd9d9_0 conda-forge pthread-stubs 0.4 hcd874cb_1001 conda-forge pthreads-win32 2.9.1 hfa6e2cd_3 conda-forge py-opencv 4.5.1 py37heaed05f_0 conda-forge pyasn1 0.4.8 pypi_0 pypi pyasn1-modules 0.2.8 pypi_0 pypi pygments 2.17.2 pyhd8ed1ab_0 conda-forge pykalman 0.9.7 pyhd8ed1ab_0 conda-forge pynwb 2.3.3 pypi_0 pypi pyparsing 3.0.6 pypi_0 pypi pyrsistent 0.19.3 pypi_0 pypi pyside2 5.13.2 py37h760f651_8 conda-forge python 3.7.12 h7840368_100_cpython conda-forge python-dateutil 2.9.0 pyhd8ed1ab_0 conda-forge python-rapidjson 1.9 py37h7f67f24_0 conda-forge python_abi 3.7 4_cp37m conda-forge pytz 2024.1 pyhd8ed1ab_0 conda-forge pywavelets 1.3.0 py37h3a130e4_1 conda-forge pyyaml 6.0 py37hcc03f2d_4 conda-forge pyzmq 24.0.1 py37h7347f05_0 conda-forge qimage2ndarray 1.10.0 pypi_0 pypi qt 5.12.9 h556501e_6 conda-forge qtpy 2.4.1 pyhd8ed1ab_0 conda-forge requests 2.26.0 pypi_0 pypi requests-oauthlib 1.3.0 pypi_0 pypi rich 13.7.1 pyhd8ed1ab_0 conda-forge ruamel-yaml 0.17.32 pypi_0 pypi ruamel-yaml-clib 0.2.7 pypi_0 pypi scikit-image 0.19.3 py37h3182a2c_1 conda-forge scikit-learn 1.0 py37ha78be43_1 conda-forge scikit-video 1.1.11 pyh24bf2e0_0 conda-forge scipy 1.7.3 py37hb6553fb_0 conda-forge seaborn 0.12.2 hd8ed1ab_0 conda-forge seaborn-base 0.12.2 pyhd8ed1ab_0 conda-forge segmentation-models 1.0.1 pypi_0 pypi setuptools 59.8.0 py37h03978a9_1 conda-forge setuptools-scm 6.3.2 pypi_0 pypi shapely 1.8.5 py37h475e9a0_0 conda-forge six 1.16.0 pyh6c4a22f_0 conda-forge sleap 1.3.3 pypi_0 pypi snappy 1.1.10 hfb803bf_1 conda-forge sqlite 3.46.0 h2466b09_0 conda-forge statsmodels 0.13.2 py37h3a130e4_0 conda-forge tbb 2021.12.0 hc790b64_1 conda-forge tensorboard 2.7.0 pypi_0 pypi tensorboard-data-server 0.6.1 pypi_0 pypi tensorboard-plugin-wit 1.8.0 pypi_0 pypi tensorflow 2.7.0 pypi_0 pypi tensorflow-estimator 2.7.0 pypi_0 pypi tensorflow-hub 0.12.0 pyhca92ed8_0 conda-forge tensorflow-io-gcs-filesystem 0.23.1 pypi_0 pypi termcolor 1.1.0 pypi_0 pypi threadpoolctl 3.1.0 pyh8a188c0_0 conda-forge tifffile 2021.11.2 pyhd8ed1ab_0 conda-forge tk 8.6.13 h5226925_1 conda-forge tomli 2.0.0 pypi_0 pypi toolz 0.12.1 pyhd8ed1ab_0 conda-forge typing-extensions 4.0.1 pypi_0 pypi typing_extensions 4.7.1 pyha770c72_0 conda-forge tzdata 2023.3 pypi_0 pypi tzlocal 5.0.1 pypi_0 pypi ucrt 10.0.22621.0 h57928b3_0 conda-forge unicodedata2 14.0.0 py37hcc03f2d_1 conda-forge urllib3 1.26.7 pypi_0 pypi vc 14.3 h8a93ad2_20 conda-forge vc14_runtime 14.40.33810 ha82c5b3_20 conda-forge vs2015_runtime 14.40.33810 h3bf8584_20 conda-forge werkzeug 2.0.2 pypi_0 pypi wheel 0.42.0 pyhd8ed1ab_0 conda-forge wrapt 1.13.3 pypi_0 pypi xorg-libxau 1.0.11 hcd874cb_0 conda-forge xorg-libxdmcp 1.1.3 hcd874cb_0 conda-forge xz 5.2.6 h8d14728_0 conda-forge yaml 0.2.5 h8ffe710_2 conda-forge zeromq 4.3.4 h0e60522_1 conda-forge zfp 0.5.5 h0e60522_8 conda-forge zipp 3.6.0 pypi_0 pypi zlib 1.2.13 h2466b09_6 conda-forge zlib-ng 2.0.7 hcfcfb64_0 conda-forge zstd 1.5.6 h0ea2cb4_0 **conda-forge**
Logs ``` # paste relevant logs here, if any ```

Screenshots

error_screenshot

How to reproduce

  1. Go to '...'
  2. Click on '....'
  3. Scroll down to '....'
  4. See error
eberrigan commented 4 days ago

Hi @maia-g,

Please upload the .slp file here and I will check it.

Thanks,

Elizabeth