Overwrite the `CameraGroup.optim_points` function

roomrys commented 4 months ago

Description

This PR is a quick fix to the fact that CameraGroup.optim_points from the aniposelib library does not handle nan values very well. The optim_points function is only called when we have a Skeleton with > 20 Nodes.

If upon triangulating, the user had some Points set as not visible (there are less than 2 visible labels for the same node), then we would get projections that look like so:

Overwriting the culprit CameraGroup.optim_points to simply pass through the 3D points instead of trying to optimize them yields the desired result:

And, when we double click, the non-visible node is initialized closeby:

This PR is just a quick fix to allow people to continue labeling with high-node skeletons until we get a PR (non-existent atm) merged into aniposelib to fix this issue at the source.

Types of changes

[x] Bugfix
[ ] New feature
[ ] Refactor / Code style update (no logical changes)
[ ] Build / CI changes
[ ] Documentation Update
[ ] Other (explain)

Does this address any currently open issues?

[list open issues here]

Outside contributors checklist

[ ] Review the guidelines for contributing to this repository
[ ] Read and sign the CLA and add yourself to the authors list
[ ] Make sure you are making a pull request against the develop branch (not main). Also you should start your branch off develop
[ ] Add tests that prove your fix is effective or that your feature works
[ ] Add necessary documentation (if appropriate)

Thank you for contributing to SLEAP!

:heart:

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codecov[bot] commented 4 months ago

Codecov Report

Attention: Patch coverage is 50.00000% with 1 line in your changes missing coverage. Please review.

Project coverage is 74.10%. Comparing base (42ffe4e) to head (f85e2f6).

Files	Patch %	Lines
sleap/io/cameras.py	50.00%	1 Missing :warning:

Additional details and impacted files

```diff @@ Coverage Diff @@ ## liezl/add-gui-elements-for-sessions #1845 +/- ## ======================================================================= - Coverage 74.10% 74.10% -0.01% ======================================================================= Files 135 135 Lines 25343 25345 +2 ======================================================================= + Hits 18781 18782 +1 - Misses 6562 6563 +1 ```

:umbrella: View full report in Codecov by Sentry.
:loudspeaker: Have feedback on the report? Share it here.

talmolab / sleap