talmolab / sleap

A deep learning framework for multi-animal pose tracking.
https://sleap.ai
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Do not apply offset when double clicking a `PredictedInstance` #1888

Closed roomrys closed 3 months ago

roomrys commented 3 months ago

Description

Whoops! The init_method == "predicted" did not do what I thought it did. When we double click a PredictedInstance (to create a user-labeled Instance), the init_method is the default "best" https://github.com/talmolab/sleap/blob/28c34e22e0cf78e1774476d0ac76c7ea0b4814fe/sleap/gui/app.py#L1597-L1619

Hence the intended check to see if we were creating from a double clicked prediction was not checking for the right thing https://github.com/talmolab/sleap/blob/28c34e22e0cf78e1774476d0ac76c7ea0b4814fe/sleap/gui/commands.py#L3017-L3024 .

Instead of adding more convoluted logic for determining when to add offset from the already given parameters, this PR instead adds an additional offset argument that can be passed in when calling the newInstance command from the desired methods.


Others: Make QtVideoPlayer more unit-testable

This PR also adds the attributes QtVideoPlayer.context_menu (for keeping the right click context menu in memory and able to be tested) and QtVideoPlayer._menu_actions (to easily refer to the actions stored in the context menu by the names seen in the GUI - also for testability).

This PR also refactors the QtVideoPlater.show_contextual_menu method by delegating the creation of the menu to a new method QtVideoPlayer.create_contextual_menu which allows us to test the menu actions without needing to run the QMenu.exec_ method and trying to simulate a click on the menu.

Types of changes

Does this address any currently open issues?

Outside contributors checklist

Thank you for contributing to SLEAP!

:heart:

Summary by CodeRabbit

coderabbitai[bot] commented 3 months ago

Walkthrough

The recent updates enhance the instance creation process in the application by introducing an offset parameter, allowing for better control over the positioning of new instances. These changes are reflected across multiple components, including the GUI commands and widget interactions. Additionally, testing frameworks have been improved to validate these behaviors, ensuring that the application performs as intended across various user interactions.

Changes

Files Change Summary
sleap/gui/app.py Added an offset parameter in newInstance method call within new_instance_menu_action and included a docstring for clarity.
sleap/gui/widgets/video.py Refactored show_contextual_menu to use a new method create_contextual_menu, improving code organization and maintainability.
tests/gui/widgets/test_docks.py Updated test_instances_dock to include centered_pair_predictions and verify the functionality of the "new instance" button with correct positioning.

Sequence Diagram(s)

sequenceDiagram
    participant User
    participant GUI
    participant Commands
    participant Instances

    User->>GUI: Click "New Instance" button
    GUI->>Commands: Call newInstance(init_method, offset=10)
    Commands->>Instances: Create new instance with offset
    Instances-->>Commands: Return new instance
    Commands-->>GUI: Update UI with new instance
    GUI-->>User: Display new instance

🐰 In a meadow so bright,
New instances take flight.
With offsets in tow,
They leap to and fro,
A hop skip and jump,
Code's joy in a lump! 🌼


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codecov[bot] commented 3 months ago

Codecov Report

Attention: Patch coverage is 84.00000% with 4 lines in your changes missing coverage. Please review.

Project coverage is 74.49%. Comparing base (7ed1229) to head (5c13fd6). Report is 27 commits behind head on develop.

Files Patch % Lines
sleap/gui/widgets/video.py 73.33% 4 Missing :warning:
Additional details and impacted files ```diff @@ Coverage Diff @@ ## develop #1888 +/- ## =========================================== + Coverage 73.30% 74.49% +1.18% =========================================== Files 134 135 +1 Lines 24087 24781 +694 =========================================== + Hits 17658 18461 +803 + Misses 6429 6320 -109 ```

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