Closed yonatans2 closed 7 months ago
library(mcATAC) wd <- '/net/mraid14/export/tgdata/users/yonshap/proj/mmcortex' setwd(wd) my_genome <- "mm10" gset_genome(my_genome) mca <- readRDS('./output/mcatac/mmcortex_mcatac_feat_peaks.rds') scc <- scc_read(path = './data/frag_reads_28122022/') ✔ Succesfully read a ScCounts object from ./data/frag_reads_28122022/ > scpeaks <- scc_to_peaks(sc_counts = scc, peaks = dplyr::select(mca@peaks, chrom, start, end, peak_name)) Error in data.frame(i = all_0_idxs, j = 1, x = 0) : arguments imply differing number of rows: 0, 1