Biomiha
commented
3 years ago Hi all, I'd also like to add I'm getting the same error running metacell in a Docker container on an AWS instance. I'm using the ensembl gene ids as rownames for the count matrix but it's worked for me before. Thanks, Miha
The error happened while the guided tutorial on 8K PBMCs was attempted to be run. It run without problems, until the method "mcell_add_cgraph_from_mat_bknn(mat_id="test", gset_id = "test_feats", graph_id="test_graph", K=100, dsamp=T)" generates the error. Error message:
Error in intI(j, n = x@Dim[2], dn[[2]], give.dn = FALSE) : invalid character indexing Calls: mcell_add_cgraph_from_mat_bknn ... callGeneric -> eval -> eval -> [ -> [ -> subCsp_cols -> intI Moreover: Warning message: In mclapply(argsList, FUN, mc.preschedule = preschedule, mc.set.seed = set.seed, : scheduled cores 1, 9 did not deliver results, all values of the jobs will be affected Execution stopped
the program was executed in a 16GB RAM intel i7 machine