filtered 165099049 left with 2807676 based on co-cluster imbalance
building metacell object, #mc 1729
add batch counts
compute footprints
33%...46%...59%...70%...84%...97%...100%
compute absolute ps
26%...34%...45%...58%...70%...82%...94%...100%
compute coverage ps
26%...35%...48%...59%...72%...85%...98%...100%
reordering metacells by hclust and most variable two markers
reorder on Stmn2 vs Ccnd2
Error in apply(u_gi[fr:to, ], 1, max) :
dim(X) must have a positive length
Calls: generate_mc ... mcell_plot_outlier_heatmap -> mc_compute_outlier_fc -> apply
In addition: Warning messages:
1: In cor(x, ctot) : the standard deviation is zero
2: In cor(x, ctot) : the standard deviation is zero
3: In cor(x, ctot) : the standard deviation is zero
4: In cor(x, ctot) : the standard deviation is zero
Execution halted
Got the following error:
filtered 165099049 left with 2807676 based on co-cluster imbalance building metacell object, #mc 1729 add batch counts compute footprints 33%...46%...59%...70%...84%...97%...100% compute absolute ps 26%...34%...45%...58%...70%...82%...94%...100% compute coverage ps 26%...35%...48%...59%...72%...85%...98%...100% reordering metacells by hclust and most variable two markers reorder on Stmn2 vs Ccnd2 Error in apply(u_gi[fr:to, ], 1, max) : dim(X) must have a positive length Calls: generate_mc ... mcell_plot_outlier_heatmap -> mc_compute_outlier_fc -> apply In addition: Warning messages: 1: In cor(x, ctot) : the standard deviation is zero 2: In cor(x, ctot) : the standard deviation is zero 3: In cor(x, ctot) : the standard deviation is zero 4: In cor(x, ctot) : the standard deviation is zero Execution halted