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tanaylab / metacells

Metacells - Single-cell RNA Sequencing Analysis
MIT License
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Adding forced genes to feature genes in divide_and_conquer_pipeline #46

Closed orimosko closed 1 year ago

orimosko commented 1 year ago

Hi,

In metacells.pipeline.feature.extract_feature_data, we can manually add gene names that we want to include as feature genes (forced genes). However, I wasn't able to find a way to add them as part of the divide_and_conquer pipeline. Did I miss the parameter or is this not possible in the unified function?

Thanks! Ori

orenbenkiki commented 1 year ago

In the latest pubished 0.9.*, if you set a select_gene mask before calling the divide-and-concquer algorithm, it will force it to use these genes all the time instead of whatever it would have chosen by itself.