compute_for_mcview doesn't add mcview_format

[ukleiner]

Hi, I'm running metacells vignette (different data, same procedure). After running mc.pl.compute_for_mcview(adata=clean, gdata=metacells, random_seed=123456, compute_var_var_similarity=dict(top=50, bottom=50)) the metacells AnnData object doesn't have an additional attribute 'mcview_format' in it's uns property and MCView complains about it missing. I'm running with

import logging
mc.ut.setup_logger(level=logging.DEBUG)

And the only logs while running compute_for_mcview are

~/.local/lib/python3.9/site-packages/umap/umap_.py:1780: UserWarning: using precomputed metric; inverse_transform will be unavailable
  warn("using precomputed metric; inverse_transform will be unavailable")
~/.local/lib/python3.9/site-packages/umap/umap_.py:1780: UserWarning: using precomputed metric; inverse_transform will be unavailable
  warn("using precomputed metric; inverse_transform will be unavailable")
100%|██████████[00:16]

Running manually mc.utilities.set_m_data(metacells, "mcview_format", "1.0") does add the key to the dict (but MCView stil complains).

Any ideas how to solve? Everything else works as expected

Tnx

[orenbenkiki]

Is this the version from pip (0.8) or from the head of github (0.9-dev)?

[ukleiner]

Pip version

[orenbenkiki]

The updated README w/ all the new fields only applies to 0.9. I've been saying we are "just about to release it" to pip for a while now, but some thigs kept coming up. Right now we plan on releasing it before the end of the month. If nothing else comes up :-)