assembly a high heterozygous

tangerzhang / ALLHiC

ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data

174 stars 39 forks source link

assembly a high heterozygous #10

Closed yilunhuangyue closed 5 years ago

yilunhuangyue commented 5 years ago

Hi, I am assembled a high heterozygous genome. The assembled size is larger than estimated size. Do I need to remove the alternative contigs before using AllHic? Thanks for any advices~

tangerzhang commented 5 years ago

Yes, remove the heterozygous contigs and then link the non-redundant sequences into one single haplotype to represent the genome of the highly heterozygous genome.