questions about subsequent processing of allhic assembly results

tangerzhang / ALLHiC

ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data

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questions about subsequent processing of allhic assembly results #11

Closed caixu0518 closed 5 years ago

caixu0518 commented 5 years ago

Hi, @tanghaibao and @tangerzhang ,

Compared to the reference genome, I found many inversions and other structural errors in the allhic results. I wanted to know if there were any post scripts in your pipelines to correct these errors and detrermined chromosome boundaries?

best, Xu

tangerzhang commented 5 years ago

Hi Xu, We do not have the post scripts to process these errors. These structural errors have to be corrected manually, currently.