Genome assembly of aneuploid plant species

tangerzhang / ALLHiC

ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data

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Genome assembly of aneuploid plant species #125

Open sandipmkale opened 2 years ago

sandipmkale commented 2 years ago

Hello, i am working on a plant species which is highly heterozygous and contains 3 trisomic chromosomes. We have both HiFi and HiC data. Is it possible to generate phased assembly using all hic pipeline.

Thanks alot

Sandip

tangerzhang commented 2 years ago

Yes, It should be OK to generate the phased assembly using ALLHiC pipeline.