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tangerzhang / ALLHiC

ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
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error in classify.pl (no data in allele contig table) #168

Open karthickbrlab opened 1 year ago

karthickbrlab commented 1 year ago

blastn -query dip_cds.fa -db brapa.cds -out dr.blast.out -evalue 0.001 -outfmt 6 -num_threads 4 -num_alignments 5

perl blastn_parse.pl -i dr.blast.out -o Edr.blast.out -q dip_cds.fa -b 1 -c 0.6 -d 0.8

perl classify.pl -i Edr.blast.out -p 2 -r brapa.gff -g dip.gff

Use of uninitialized value $tgene in substitution (s///) at classify.pl line 54, line 259260. Use of uninitialized value $tgene in hash element at classify.pl line 55, line 259260.

13061994 commented 11 months ago

Can you get this error solution?

karthickbrlab commented 11 months ago

Unfortunately, no.

On Wed, 20 Dec, 2023, 9:47 am 13061994, @.***> wrote:

Can you get this error solution?

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