Allele.ctg.table for genome with no annotation

tangerzhang / ALLHiC

ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data

174 stars 39 forks source link

Allele.ctg.table for genome with no annotation #38

Closed pezhmansafdari closed 4 years ago

pezhmansafdari commented 4 years ago

Hi,

I have a fresh highly polymorphic denovo assembly and I am not planning on doing annotation before I phase the genome. Is there a way to create Allele.ctg.table without annotation (CDS and GFF3) files?

BR, Pezhman

tangerzhang commented 4 years ago

Yes, here is an alternative approach to generate the Allele.ctg.table without annotation: https://github.com/tangerzhang/ALLHiC/issues/16

pezhmansafdari commented 4 years ago

Thanks