What should I do with low heterozygous and diploid genome？

tangerzhang / ALLHiC

ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data

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What should I do with low heterozygous and diploid genome？ #47

Closed DustinChen1986 closed 4 years ago

DustinChen1986 commented 4 years ago

I have a low heterozygous and diploid insect genome of about 480m. I notice ALLHIC is nearly the only HIC assembly tool maintained well. So I want to try ALLHIC to finish my assembly. The question is what I should do with this issue , just follow the WIKI or skip the Prune step?

DustinChen1986 commented 4 years ago

Sorry. I think I find the answer. https://github.com/tangerzhang/ALLHiC/wiki/ALLHiC:-scaffolding-of-a-simple-diploid-genome

tangerzhang commented 4 years ago

Good to know you found the solution :-)