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tangerzhang / ALLHiC

ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
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some chromosome is too long and some is too short #55

Closed leeun67 closed 4 years ago

leeun67 commented 4 years ago

hi ,dear author. when i use this tool to assemble my genome. first,i use the mecat2, and then i use pilion to polish, then use purge-haplotig, finalla use allhic, the survey genome size is 450M, and finally i find some chromosome more than 60M, sonme less than 5M, It is very different to the reference genome ,what should i do to adjust ?Thank you for your attention.

tangerzhang commented 4 years ago

Hi @leeun67 We have discussion regarding this issue with a couple of ALLHiC users. Please see the following link: https://github.com/tangerzhang/ALLHiC/issues/8 Hopefully, this could help you out.