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tangerzhang / ALLHiC

ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
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Plotting stage #84

Open ardy20 opened 3 years ago

ardy20 commented 3 years ago

Hi At plotting stage, it is not clear how the chrn.list can be prepared, especially the length of each group. Could you please explain a bit more?

sc-zhang commented 3 years ago

After ALLHiC_build stage, you will get an assembled fasta file named "groups.asm.fasta", and you need calculate the length of each sequence, then write them into chrn.list with the chromosomes which you want plot.

The format of chrn.list is like: group1 10000000 group2 9000000