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tanghaibao / goatools

Python library to handle Gene Ontology (GO) terms
BSD 2-Clause "Simplified" License
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questions about semantic similarity notebook #223

Open sunyi000 opened 2 years ago

sunyi000 commented 2 years ago

Hi, I tried to replicate the semantic similarity notebook, using the same version of obo file and tair.gaf 2019-04-17

I got 0.0 for both Resnik and Lin score.. IC for the same term GO:0048364 is also different, I have 4.38057 and the example is 7

I'm quite new to this area , could you please shed some lights on why mine is different from the example?

Thanks