Open akaur1988 opened 1 year ago
While running goatools, I get following error message. I am also attaching first 20 lines of my study, population and association file. Please help me with this.
Thanks $ 20_lines_association.txt 20_lines_population.txt 20_lines_study.txt study=Gene_list_of_3D_genes.txt $ population=Mapping_spud.txt $ association=parsed_GO $ output=go_annotation_spud_3d $ obo=go-basic.obo $ find_enrichment.py --alpha=$alpha --pval=$p_val --indent --obo $obo $study $population $association > $output
WARNING: only 0.0 fraction of genes/proteins in study are found in the population background.
ERROR: only 0.0 of genes/proteins in the study are found in the background population. Please check.
While running goatools, I get following error message. I am also attaching first 20 lines of my study, population and association file. Please help me with this.
Thanks $ 20_lines_association.txt 20_lines_population.txt 20_lines_study.txt study=Gene_list_of_3D_genes.txt $ population=Mapping_spud.txt $ association=parsed_GO $ output=go_annotation_spud_3d $ obo=go-basic.obo $ find_enrichment.py --alpha=$alpha --pval=$p_val --indent --obo $obo $study $population $association > $output
WARNING: only 0.0 fraction of genes/proteins in study are found in the population background.
ERROR: only 0.0 of genes/proteins in the study are found in the background population. Please check.