AttributeError In godag/gp_taks.py file

[dinavod12]

In godag/gp_taks.py file when I am using this code

def get_id_to_parents(objs): id_to_parents = {} for obj in objs: _get_id2parents(id_to_parents,obj.item_id,obj) return {i:j for i,j in id_to_parents.items() if j}

get_id_to_parents(['GO:0048869'])

it providing me this error

AttributeError Traceback (most recent call last) Input In [87], in <cell line: 1>() ----> 1 get_id_to_parents(['GO:0048869'])

Input In [86], in get_id_to_parents(objs) 2 id_to_parents = {} 3 for obj in objs: ----> 4 _get_id2parents(id_to_parents,obj.item_id,obj) 5 return {i:j for i,j in id_to_parents.items() if j}

AttributeError: 'str' object has no attribute 'item_id'

But when I am making the change instead of using this obj.item_id I am using go[obj].item_id ..It's working

Is this is correct????

[tanghaibao]

@dinavod12

The second usage seems correct.

As the error suggests, _get_id2parents is expecting GO object, not GO id (which is a str). Also, check a similar function in the same module get_id2parents - that's also expecting GO object.

[dinavod12]

I had found all the go parents for the one go id ..these are the parents

{'GO:0008150': set(), 'GO:0065007': {'GO:0008150'}, 'GO:0050789': {'GO:0008150', 'GO:0065007'}, 'GO:0050794': {'GO:0008150', 'GO:0050789', 'GO:0065007'}, 'GO:0051128': {'GO:0008150', 'GO:0050789', 'GO:0050794', 'GO:0065007'}, 'GO:0050807': {'GO:0008150', 'GO:0050789', 'GO:0050794', 'GO:0051128', 'GO:0065007'}}

is there is any way to draw DAG graph for this in hierarchical structure..

[dinavod12]

@dinavod12

The second usage seems correct.

As the error suggests, _get_id2parents is expecting GO object, not GO id (which is a str). Also, check a similar function in the same module get_id2parents - that's also expecting GO object.

oky ....