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tanghaibao / jcvi

Python library to facilitate genome assembly, annotation, and comparative genomics
BSD 2-Clause "Simplified" License
741 stars 187 forks source link

Annotation transfer #109

Closed francicco closed 5 years ago

francicco commented 5 years ago

Hi,

Is there a way to transfer GTF coordinates to the pseudo-chromosoms?

Best, F

tanghaibao commented 5 years ago

@francicco UCSC liftover is your friend - and GTF is GFF version 2. https://github.com/tanghaibao/jcvi/wiki/ALLMAPS%3A-How-to-lift-over-gene-annotations

Haibao

francicco commented 5 years ago

Thanks!!!